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Correspondence between model structures and hydrological signatures: a large-sample case study using 508 Brazilian catchments 期刊论文
Water Resources Research, 2022
作者:  Paula C David;  Pedro L. B Chaffe;  Vinicius B. P Chagas;  Marco Dal Molin;  Debora Y Oliveira;  Antonio H. F Klein;  Fabrizio Fenicia
收藏  |  浏览/下载:9/0  |  提交时间:2022/02/23
Integrating environmental variability to broaden the research on coral responses to future ocean conditions 期刊论文
Global Change Biology, 2021
作者:  Maren Ziegler;  Andrea Anton;  Shannon G. Klein;  Nils Rä;  decker;  Nathan R. Geraldi;  Sebastian Schmidt-Roach;  Vincent Saderne;  Peter J. Mumby;  Maha J. Cziesielski;  Cecilia Martin;  Thomas L. Frö;  licher;  John M. Pandolfi;  David J. Suggett;  Manuel Aranda;  Carlos M. Duarte;  Christian R. Voolstra
收藏  |  浏览/下载:13/0  |  提交时间:2021/09/14
Projecting coral responses to intensifying marine heatwaves under ocean acidification 期刊论文
Global Change Biology, 2021
作者:  Shannon G. Klein;  Nathan R. Geraldi;  Andrea Anton;  Sebastian Schmidt-Roach;  Maren Ziegler;  Maha J. Cziesielski;  Cecilia Martin;  Nils Rä;  decker;  Thomas L. Frö;  licher;  Peter J. Mumby;  John M. Pandolfi;  David J. Suggett;  Christian R. Voolstra;  Manuel Aranda;  Carlos. M. Duarte
收藏  |  浏览/下载:12/0  |  提交时间:2021/08/30
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence 期刊论文
Science, 2021
作者:  Moritz U. G. Kraemer;  Verity Hill;  Christopher Ruis;  Simon Dellicour;  Sumali Bajaj;  John T. McCrone;  Guy Baele;  Kris V. Parag;  Anya Lindström Battle;  Bernardo Gutierrez;  Ben Jackson;  Rachel Colquhoun;  Áine O’Toole;  Brennan Klein;  Alessandro Vespignani;  COVID-19 Genomics UK Consortium‡;  Erik Volz;  Nuno R. Faria;  David M. Aanensen;  Nicholas J. Loman;  Louis du Plessis;  Simon Cauchemez;  Andrew Rambaut;  Samuel V. Scarpino;  Oliver G. Pybus
收藏  |  浏览/下载:12/0  |  提交时间:2021/08/25
Replication timing maintains the global epigenetic state in human cells 期刊论文
Science, 2021
作者:  Kyle N. Klein;  Peiyao A. Zhao;  Xiaowen Lyu;  Takayo Sasaki;  Daniel A. Bartlett;  Amar M. Singh;  Ipek Tasan;  Meng Zhang;  Lotte P. Watts;  Shin-ichiro Hiraga;  Toyoaki Natsume;  Xuemeng Zhou;  Timour Baslan;  Danny Leung;  Masato T. Kanemaki;  Anne D. Donaldson;  Huimin Zhao;  Stephen Dalton;  Victor G. Corces;  David M. Gilbert
收藏  |  浏览/下载:14/0  |  提交时间:2021/04/29
Neuropilin-1 is a host factor for SARS-CoV-2 infection 期刊论文
Science, 2020
作者:  James L. Daly;  Boris Simonetti;  Katja Klein;  Kai-En Chen;  Maia Kavanagh Williamson;  Carlos Antón-Plágaro;  Deborah K. Shoemark;  Lorena Simón-Gracia;  Michael Bauer;  Reka Hollandi;  Urs F. Greber;  Peter Horvath;  Richard B. Sessions;  Ari Helenius;  Julian A. Hiscox;  Tambet Teesalu;  David A. Matthews;  Andrew D. Davidson;  Brett M. Collins;  Peter J. Cullen;  Yohei Yamauchi
收藏  |  浏览/下载:13/0  |  提交时间:2020/11/20
Feasibility of blood testing combined with PET-CT to screen for cancer and guide intervention 期刊论文
Science, 2020
作者:  Anne Marie Lennon;  Adam H. Buchanan;  Isaac Kinde;  Andrew Warren;  Ashley Honushefsky;  Ariella T. Cohain;  David H. Ledbetter;  Fred Sanfilippo;  Kathleen Sheridan;  Dillenia Rosica;  Christian S. Adonizio;  Hee Jung Hwang;  Kamel Lahouel;  Joshua D. Cohen;  Christopher Douville;  Aalpen A. Patel;  Leonardo N. Hagmann;  David D. Rolston;  Nirav Malani;  Shibin Zhou;  Chetan Bettegowda;  David L. Diehl;  Bobbi Urban;  Christopher D. Still;  Lisa Kann;  Julie I. Woods;  Zachary M. Salvati;  Joseph Vadakara;  Rosemary Leeming;  Prianka Bhattacharya;  Carroll Walter;  Alex Parker;  Christoph Lengauer;  Alison Klein;  Cristian Tomasetti;  Elliot K. Fishman;  Ralph H. Hruban;  Kenneth W. Kinzler;  Bert Vogelstein;  Nickolas Papadopoulos
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/06
Climate velocity reveals increasing exposure of deep-ocean biodiversity to future warming 期刊论文
NATURE CLIMATE CHANGE, 2020, 10 (6) : 576-+
作者:  Brito-Morales, Isaac;  Schoeman, David S.;  Molinos, Jorge Garcia;  Burrows, Michael T.;  Klein, Carissa J.;  Arafeh-Dalmau, Nur;  Kaschner, Kristin;  Garilao, Cristina;  Kesner-Reyes, Kathleen;  Richardson, Anthony J.
收藏  |  浏览/下载:15/0  |  提交时间:2020/06/01
Coevolutionary Governance of Antibiotic and Pesticide Resistance 期刊论文
TRENDS IN ECOLOGY & EVOLUTION, 2020, 35 (6) : 484-494
作者:  Jorgensen, Peter Sogaard;  Folke, Carl;  Henriksson, Patrik J. G.;  Malmros, Karin;  Troell, Max;  Zorzet, Anna;  Aktipis, Athena;  Brown, Zachary;  Corriere, Yves;  Downes, Sharon;  Dunn, Robert R.;  Epstein, Graham;  Frisvold, George;  Grohn, Yrjo;  Gujar, Govind Tikaramsa;  Hawthorne, David;  Jasovsky, Dusan;  Klein, Eili Y.;  Klein, Franziska;  Lhermie, Guillaume;  Mota-Sanchez, David;  Omoto, Celso;  Scott, H. Morgan;  Wemli, Didier;  Carroll, Scott P.
收藏  |  浏览/下载:8/0  |  提交时间:2020/05/13
Tobacco smoking and somatic mutations in human bronchial epithelium 期刊论文
NATURE, 2020, 578 (7794) : 266-+
作者:  Sharma, Nikhil;  Flaherty, Kali;  Lezgiyeva, Karina;  Wagner, Daniel E.;  Klein, Allon M.;  Ginty, David D.
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Whole-genome sequencing of normal bronchial epithelium from 16 individuals shows that tobacco smoking increases genomic heterogeneity, mutational burden and driver mutations, whereas stopping smoking promotes replenishment of the epithelium with near-normal cells.


Tobacco smoking causes lung cancer(1-3), a process that is driven by more than 60 carcinogens in cigarette smoke that directly damage and mutate DNA(4,5). The profound effects of tobacco on the genome of lung cancer cells are well-documented(6-10), but equivalent data for normal bronchial cells are lacking. Here we sequenced whole genomes of 632 colonies derived from single bronchial epithelial cells across 16 subjects. Tobacco smoking was the major influence on mutational burden, typically adding from 1,000 to 10,000 mutations per cell  massively increasing the variance both within and between subjects  and generating several distinct mutational signatures of substitutions and of insertions and deletions. A population of cells in individuals with a history of smoking had mutational burdens that were equivalent to those expected for people who had never smoked: these cells had less damage from tobacco-specific mutational processes, were fourfold more frequent in ex-smokers than current smokers and had considerably longer telomeres than their more-mutated counterparts. Driver mutations increased in frequency with age, affecting 4-14% of cells in middle-aged subjects who had never smoked. In current smokers, at least 25% of cells carried driver mutations and 0-6% of cells had two or even three drivers. Thus, tobacco smoking increases mutational burden, cell-to-cell heterogeneity and driver mutations, but quitting promotes replenishment of the bronchial epithelium from mitotically quiescent cells that have avoided tobacco mutagenesis.