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Extant timetrees are consistent with a myriad of diversification histories 期刊论文
NATURE, 2020, 580 (7804) : 502-+
作者:  Bhaskar, M. K.;  Riedinger, R.;  Machielse, B.;  Levonian, D. S.;  Nguyen, C. T.;  Knall, E. N.;  Park, H.;  Englund, D.;  Loncar, M.;  Sukachev, D. D.;  Lukin, M. D.
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/03

An infinite number of alternative diversification scenarios-which may have markedly different, but equally plausible, dynamics-can underpin a given time-calibrated phylogeny of extant species, suggesting many previous studies have over-interpreted phylogenetic evidence.


Time-calibrated phylogenies of extant species (referred to here as '  extant timetrees'  ) are widely used for estimating diversification dynamics(1). However, there has been considerable debate surrounding the reliability of these inferences(2-5) and, to date, this critical question remains unresolved. Here we clarify the precise information that can be extracted from extant timetrees under the generalized birth-death model, which underlies most existing methods of estimation. We prove that, for any diversification scenario, there exists an infinite number of alternative diversification scenarios that are equally likely to have generated any given extant timetree. These '  congruent'  scenarios cannot possibly be distinguished using extant timetrees alone, even in the presence of infinite data. Importantly, congruent diversification scenarios can exhibit markedly different and yet similarly plausible dynamics, which suggests that many previous studies may have over-interpreted phylogenetic evidence. We introduce identifiable and easily interpretable variables that contain all available information about past diversification dynamics, and demonstrate that these can be estimated from extant timetrees. We suggest that measuring and modelling these identifiable variables offers a more robust way to study historical diversification dynamics. Our findings also make it clear that palaeontological data will continue to be crucial for answering some macroevolutionary questions.


  
Initial results from the New Horizons exploration of 2014 MU69, a small Kuiper Belt object 期刊论文
SCIENCE, 2019, 364 (6441) : 649-+
作者:  Stern, S. A.;  Weaver, H. A.;  Spencer, J. R.;  Olkin, C. B.;  Gladstone, G. R.;  Grundy, W. M.;  Moore, J. M.;  Cruikshank, D. P.;  Elliott, H. A.;  McKinnon, W. B.;  Parker, J. Wm.;  Verbiscer, A. J.;  Young, L. A.;  Aguilar, D. A.;  Albers, J. M.;  Andert, T.;  Andrews, J. P.;  Bagenal, F.;  Banks, M. E.;  Bauer, B. A.;  Bauman, J. A.;  Bechtold, K. E.;  Beddingfield, C. B.;  Behrooz, N.;  Beisser, K. B.;  Benecchi, S. D.;  Bernardoni, E.;  Beyer, R. A.;  Bhaskaran, S.;  Bierson, C. J.;  Binzel, R. P.;  Birath, E. M.;  Bird, M. K.;  Boone, D. R.;  Bowman, A. F.;  Bray, V. J.;  Britt, D. T.;  Brown, L. E.;  Buckley, M. R.;  Buie, M. W.;  Buratti, B. J.;  Burke, L. M.;  Bushman, S. S.;  Careich, B.;  Chaikin, A. L.;  Chavez, C. L.;  Cheng, A. F.;  Colwell, E. J.;  Conard, S. J.;  Conner, M. P.;  Conrad, C. A.;  Cook, J. C.;  Cooper, S. B.;  Custodio, O. S.;  Ore, C. M. Dalle;  Deboy, C. C.;  Dharmavaram, P.;  Dhingra, R. D.;  Dunn, G. F.;  Earle, A. M.;  Egan, A. F.;  Eisig, J.;  El-Maarry, M. R.;  Engelbrecht, C.;  Enke, B. L.;  Ercol, C. J.;  Fattig, E. D.;  Ferrell, C. L.;  Finley, T. J.;  Firer, J.;  Fischetti, J.;  Folkner, W. M.;  Fosbury, M. N.;  Fountain, G. H.;  Freeze, J. M.;  Gabasova, L.;  Glaze, L. S.;  Green, J. L.;  Griffith, G. A.;  Guo, Y.;  Hahn, M.;  Hals, D. W.;  Hamilton, D. P.;  Hamilton, S. A.;  Hanley, J. J.;  Harch, A.;  Harmon, K. A.;  Hart, H. M.;  Hayes, J.;  Hersman, C. B.;  Hill, M. E.;  Hill, T. A.;  Hofgartner, J. D.;  Holdridge, M. E.;  Horanyi, M.;  Hosadurga, A.;  Howard, A. D.;  Howett, C. J. A.;  Jaskulek, S. E.;  Jennings, D. E.;  Jensen, J. R.;  Jones, M. R.;  Kang, H. K.;  Katz, D. J.;  Kaufmann, D. E.;  Kavelaars, J. J.;  Keane, J. T.;  Keleher, G. P.;  Kinczyk, M.;  Kochte, M. C.;  Kolmnann, P.;  Krimigis, S. M.;  Kruizinga, G. L.;  Kusnierkiewicz, D. Y.;  Lahr, M. S.;  Lauer, T. R.;  Lawrence, G. B.;  Lee, J. E.;  Lessac-Chenen, E. J.;  Linscott, I. R.;  Lisse, C. M.;  Lunsford, A. W.;  Mages, D. M.;  Mallder, V. A.;  Martin, N. P.;  May, B. H.;  McComas, D. J.;  MeNutt, R. L., Jr.;  Mehoke, D. S.;  Mehoke, T. S.;  Nelson, D. S.;  Nguyen, H. D.;  Nunez, J. I.;  Ocampo, A. C.;  Owen, W. M.;  Oxton, G. K.;  Parker, A. H.;  Patzold, M.;  Pelgrift, J. Y.;  Pelletier, F. J.;  Pineau, J. P.;  Piquette, M. R.;  Porter, S. B.;  Protopapa, S.;  Quirico, E.;  Redfern, J. A.;  Regiec, A. L.;  Reitsema, H. J.;  Reuter, D. C.;  Richardson, D. C.;  Riedel, J. E.;  Ritterbush, M. A.;  Robbins, S. J.;  Rodgers, D. J.;  Rogers, G. D.;  Rose, D. M.;  Rosendal, P. E.;  Runyon, K. D.;  Ryschkewitsch, M. G.;  Saina, M. M.;  Salinas, M. J.;  Schenk, P. M.;  Scherrer, J. R.;  Schlei, W. R.;  Schmitt, B.;  Schultz, D. J.;  Schurr, D. C.;  Scipioni, F.;  Sepan, R. L.;  Shelton, R. G.;  Showalter, M. R.;  Simon, M.;  Singer, K. N.;  Stahlheber, E. W.;  Stanbridge, D. R.;  Stansberry, J. A.;  Steffi, A. J.;  Strobel, D. F.;  Stothoff, M. M.;  Stryk, T.;  Stuart, J. M.;  Summers, M. E.;  Tapley, M. B.;  Taylor, A.;  Taylor, H. W.;  Tedford, R. M.;  Throop, H. B.;  Turner, L. S.;  Umurhan, O. M.;  Van Eck, J.;  Velez, D.;  Versteeg, M. H.;  Vincent, M. A.;  Webbert, R. W.;  Weidner, S. E.;  Ii, G. E. Weigle;  Wendel, J. R.;  White, O. L.;  Whittenburg, K. E.;  Williams, B. G.;  Williams, K. E.;  Williams, S. P.;  Wimters, H. L.;  Zangari, A. M.;  Zurbuchen, T. H.
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27
Investigation of the mechanisms leading to the 2017 Montreal flood 期刊论文
CLIMATE DYNAMICS, 2019, 52: 4193-4206
作者:  Teufel, Bernardo;  Sushama, L.;  Huziy, O.;  Diro, G. T.;  Jeong, D. I.;  Winger, K.;  Garnaud, C.;  de Elia, R.;  Zwiers, F. W.;  Matthews, H. D.;  Nguyen, V. -T. -V.
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/26
On the Value of ENSO State for Urban Water Supply System Operators: Opportunities, Trade-Offs, and Challenges 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (4) : 2856-2875
作者:  Libisch-Lehner, C. P.;  Nguyen, H. T. T.;  Taormina, R.;  Nachtnebel, H. P.;  Galelli, S.
收藏  |  浏览/下载:1/0  |  提交时间:2019/11/26
Photon-mediated interactions between quantum emitters in a diamond nanocavity 期刊论文
SCIENCE, 2018, 362 (6415) : 662-+
作者:  Evans, R. E.;  Bhaskar, M. K.;  Sukachev, D. D.;  Nguyen, C. T.;  Sipahigil, A.;  Burek, M. J.;  Machielse, B.;  Zhang, G. H.;  Zibrov, A. S.;  Bielejec, E.;  Park, H.;  Loncar, M.;  Lukin, M. D.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
The development and extent of photic-zone euxinia concomitant with Woodford Shale deposition 期刊论文
AAPG BULLETIN, 2018, 102 (6) : 959-986
作者:  Connock, Gregory T.;  Nguyen, Thanh X.;  Philp, R. Paul
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq 期刊论文
SCIENCE, 2018, 360 (6386) : 331-335
作者:  Filbin, Mariella G.;  Tirosh, Itay;  Hovestadt, Volker;  Shaw, McKenzie L.;  Escalante, Leah E.;  Mathewson, Nathan D.;  Neftel, Cyril;  Frank, Nelli;  Pelton, Kristine;  Hebert, ChristineM.;  Haberler, Christine;  Yizhak, Keren;  Gojo, Johannes;  Egervari, Kristof;  Mount, Christopher;  van Galen, Peter;  Bonal, Dennis M.;  Quang-De Nguyen;  Beck, Alexander;  Sinai, Claire;  Czech, Thomas;  Dorfer, Christian;  Goumnerova, Liliana;  Lavarino, Cinzia;  Carcaboso, Angel M.;  Mora, Jaume;  Mylvaganam, Ravindra;  Luo, Christina C.;  Peyrl, Andreas;  Popovic, Mara;  Azizi, Amedeo;  Batchelor, Tracy T.;  Frosch, Matthew P.;  Martinez-Lage, Maria;  Kieran, Mark W.;  Bandopadhayay, Pratiti;  Beroukhim, Rameen;  Fritsch, Gerhard;  Getz, Gad;  Rozenblatt-Rosen, Orit;  Wucherpfennig, Kai W.;  Louis, David N.;  Monje, Michelle;  Slavc, Irene;  Ligon, Keith L.;  Golub, Todd R.;  Regev, Aviv;  Bernstein, Bradley E.;  Suva, Mario L.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
An assessment of US rare earth availability for supporting US wind energy growth targets 期刊论文
ENERGY POLICY, 2018, 113: 294-305
作者:  Imholte, D. D.;  Nguyen, R. T.;  Vedantam, A.;  Brown, M.;  Iyer, A.;  Smith, B. J.;  Collins, J. W.;  Anderson, C. G.;  O&;  39;Kelley, B.
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
First Reprocessing of Southern Hemisphere Additional Ozonesondes (SHADOZ) Ozone Profiles (1998-2016): 2. Comparisons With Satellites and Ground-Based Instruments 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2017, 122 (23)
作者:  Thompson, Anne M.;  Witte, Jacquelyn C.;  Sterling, Chance;  Jordan, Allen;  Johnson, Bryan J.;  Oltmans, Samuel J.;  Fujiwara, Masatomo;  Vomel, Holger;  Allaart, Marc;  Piters, Ankie;  Coetzee, Gert J. R.;  Posny, Francoise;  Corrales, Ernesto;  Andres Diaz, Jorge;  Felix, Christian;  Komala, Ninong;  Nga Lai;  Nguyen, H. T. Ahn;  Maata, Matakite;  Mani, Francis;  Zainal, Zamuna;  Ogino, Shin-ya;  Paredes, Francisco;  Penha, Tercio Luiz Bezerra;  da Silva, Francisco Raimundo;  Sallons-Mitro, Sukarni;  Selkirk, Henry B.;  Schmidlin, F. J.;  Stubi, Rene;  Thiongo, Kennedy
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
ozone  ozonesondes  SHADOZ  OMI  tropical tropopause layer  
UBE2O remodels the proteome during terminal erythroid differentiation 期刊论文
SCIENCE, 2017, 357 (6350)
作者:  Nguyen, Anthony T.;  Prado, Miguel A.;  Schmidt, Paul J.;  Sendamarai, Anoop K.;  Wilson-Grady, Joshua T.;  Min, Mingwei;  Campagna, Dean R.;  Tian, Geng;  Shi, Yuan;  Dederer, Verena;  Kawan, Mona;  Kuehnle, Nathalie;  Paulo, Joao A.;  Yao, Yu;  Weiss, Mitchell J.;  Justice, Monica J.;  Gygi, Steven P.;  Fleming, Mark D.;  Finley, Daniel
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/27