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Neuronal programming by microbiota regulates intestinal physiology 期刊论文
NATURE, 2020, 578 (7794) : 284-+
作者:  Li, Yilong;  Roberts, Nicola D.;  Wala, Jeremiah A.;  Shapira, Ofer;  Schumacher, Steven E.;  Kumar, Kiran;  Khurana, Ekta;  Waszak, Sebastian;  Korbel, Jan O.;  Haber, James E.;  Imielinski, Marcin;  Weischenfeldt, Joachim;  Beroukhim, Rameen;  Campbell, Peter J.;  Akdemir, Kadir C.;  Alvarez, Eva G.;  Baez-Ortega, Adrian;  Boutros, Paul C.;  Bowtell, David D. L.;  Brors, Benedikt;  Burns, Kathleen H.;  Chan, Kin;  Chen, Ken;  Cortes-Ciriano, Isidro;  Dueso-Barroso, Ana;  Dunford, Andrew J.;  Edwards, Paul A.;  Estivill, Xavier;  Etemadmoghadam, Dariush;  Feuerbach, Lars;  Fink, J. Lynn;  Frenkel-Morgenstern, Milana;  Garsed, Dale W.;  Gerstein, Mark;  Gordenin, Dmitry A.;  Haan, David;  Hess, Julian M.;  Hutter, Barbara;  Jones, David T. W.;  Ju, Young Seok;  Kazanov, Marat D.;  Klimczak, Leszek J.;  Koh, Youngil;  Lee, Eunjung Alice;  Lee, Jake June-Koo;  Lynch, Andy G.;  Macintyre, Geoff;  Markowetz, Florian;  Martincorena, Inigo;  Martinez-Fundichely, Alexander;  Meyerson, Matthew;  Miyano, Satoru;  Nakagawa, Hidewaki;  Navarro, Fabio C. P.;  Ossowski, Stephan;  Park, Peter J.;  Pearson, John, V;  Puiggros, Montserrat;  Rippe, Karsten;  Roberts, Steven A.;  Rodriguez-Martin, Bernardo;  Scully, Ralph;  Shackleton, Mark;  Sidiropoulos, Nikos;  Sieverling, Lina;  Stewart, Chip;  Torrents, David;  Tubio, Jose M. C.;  Villasante, Izar;  Waddell, Nicola;  Yang, Lixing;  Yao, Xiaotong;  Yoon, Sung-Soo;  Zamora, Jorge;  Zhang, Cheng-Zhong
收藏  |  浏览/下载:38/0  |  提交时间:2020/07/03

Neural control of the function of visceral organs is essential for homeostasis and health. Intestinal peristalsis is critical for digestive physiology and host defence, and is often dysregulated in gastrointestinal disorders(1). Luminal factors, such as diet and microbiota, regulate neurogenic programs of gut motility(2-5), but the underlying molecular mechanisms remain unclear. Here we show that the transcription factor aryl hydrocarbon receptor (AHR) functions as a biosensor in intestinal neural circuits, linking their functional output to the microbial environment of the gut lumen. Using nuclear RNA sequencing of mouse enteric neurons that represent distinct intestinal segments and microbiota states, we demonstrate that the intrinsic neural networks of the colon exhibit unique transcriptional profiles that are controlled by the combined effects of host genetic programs and microbial colonization. Microbiota-induced expression of AHR in neurons of the distal gastrointestinal tract enables these neurons to respond to the luminal environment and to induce expression of neuron-specific effector mechanisms. Neuron-specific deletion of Ahr, or constitutive overexpression of its negative feedback regulator CYP1A1, results in reduced peristaltic activity of the colon, similar to that observed in microbiota-depleted mice. Finally, expression of Ahr in the enteric neurons of mice treated with antibiotics partially restores intestinal motility. Together, our experiments identify AHR signalling in enteric neurons as a regulatory node that integrates the luminal environment with the physiological output of intestinal neural circuits to maintain gut homeostasis and health.


In a mouse model, aryl hydrocarbon receptor signalling in enteric neurons is revealed as a mechanism that helps to maintain gut homeostasis by integrating the luminal environment with the physiology of intestinal neural circuits.


  
Megahertz serial crystallography 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Wiedorn, Max O.;  Oberthuer, Dominik;  Bean, Richard;  Schubert, Robin;  Werner, Nadine;  Abbey, Brian;  Aepfelbacher, Martin;  Adriano, Luigi;  Allahgholi, Aschkan;  Al-Qudami, Nasser;  Andreasson, Jakob;  Aplin, Steve;  Awel, Salah;  Ayyer, Kartik;  Bajt, Sasa;  Barak, Imrich;  Bari, Sadia;  Bielecki, Johan;  Botha, Sabine;  Boukhelef, Djelloul;  Brehm, Wolfgang;  Brockhauser, Sandor;  Cheviakov, Igor;  Coleman, Matthew A.;  Cruz-Mazo, Francisco;  Danilevski, Cyril;  Darmanin, Connie;  Doak, R. Bruce;  Domaracky, Martin;  Doerner, Katerina;  Du, Yang;  Fangohr, Hans;  Fleckenstein, Holger;  Frank, Matthias;  Fromme, Petra;  Ganan-Calvo, Alfonso M.;  Gevorkov, Yaroslav;  Giewekemeyer, Klaus;  Ginn, Helen Mary;  Graafsma, Heinz;  Graceffa, Rita;  Greiffenberg, Dominic;  Gumprecht, Lars;  Goettlicher, Peter;  Hajdu, Janos;  Hauf, Steffen;  Heymann, Michael;  Holmes, Susannah;  Horke, Daniel A.;  Hunter, Mark S.;  Imlau, Siegfried;  Kaukher, Alexander;  Kim, Yoonhee;  Klyuev, Alexander;  Knoska, Juraj;  Kobe, Bostjan;  Kuhn, Manuela;  Kupitz, Christopher;  Kuepper, Jochen;  Lahey-Rudolph, Janine Mia;  Laurus, Torsten;  Le Cong, Karoline;  Letrun, Romain;  Xavier, P. Lourdu;  Maia, Luis;  Maia, Filipe R. N. C.;  Mariani, Valerio;  Messerschmidt, Marc;  Metz, Markus;  Mezza, Davide;  Michelat, Thomas;  Mills, Grant;  Monteiro, Diana C. F.;  Morgan, Andrew;  Muhlig, Kerstin;  Munke, Anna;  Muennich, Astrid;  Nette, Julia;  Nugent, Keith A.;  Nuguid, Theresa;  Orville, Allen M.;  Pandey, Suraj;  Pena, Gisel;  Villanueva-Perez, Pablo;  Poehlsen, Jennifer;  Previtali, Gianpietro;  Redecke, Lars;  Riekehr, Winnie Maria;  Rohde, Holger;  Round, Adam;  Safenreiter, Tatiana;  Sarrou, Iosifina;  Sato, Tokushi;  Schmidt, Marius;  Schmitt, Bernd;  Schoenherr, Robert;  Schulz, Joachim;  Sellberg, Jonas A.;  Seibert, M. Marvin;  Seuring, Carolin;  Shelby, Megan L.;  Shoeman, Robert L.;  Sikorski, Marcin;  Silenzi, Alessandro;  Stan, Claudiu A.;  Shi, Xintian;  Stern, Stephan;  Sztuk-Dambietz, Jola;  Szuba, Janusz;  Tolstikova, Aleksandra;  Trebbin, Martin;  Trunk, Ulrich;  Vagovic, Patrik;  Ve, Thomas;  Weinhausen, Britta;  White, Thomas A.;  Wrona, Krzysztof;  Xu, Chen;  Yefanov, Oleksandr;  Zatsepin, Nadia;  Zhang, Jiaguo;  Perbandt, Markus;  Mancuso, Adrian P.;  Betzel, Christian;  Chapman, Henry;  Barty, Anton
收藏  |  浏览/下载:24/0  |  提交时间:2019/11/27
Consent insufficient for data release Response 期刊论文
SCIENCE, 2019, 364 (6439) : 446-446
作者:  Amann, Rudolf I.;  Baichoo, Shakuntala;  Blencowe, Benjamin J.;  Bork, Peer;  Borodovsky, Mark;  Brooksbank, Cath;  Chain, Patrick S. G.;  Colwell, Rita R.;  Daffonchio, Daniele G.;  Danchin, Antoine;  de Lorenzo, Victor;  Dorrestein, Pieter C.;  Finn, Robert D.;  Fraser, Claire M.;  Gilbert, Jack A.;  Hallam, Steven J.;  Hugenholtz, Philip;  Ioannidis, John P. A.;  Jansson, Janet K.;  Kim, Jihyun F.;  Klenk, Hans-Peter;  Klotz, Martin G.;  Knight, Rob;  Konstantinidis, Konstantinos T.;  Kyrpides, Nikos C.;  Mason, Christopher E.;  McHardy, Alice C.;  Meyer, Folker;  Ouzounis, Christos A.;  Patrinos, Aristides A. N.;  Podar, Mircea;  Pollard, Katherine S.;  Ravel, Jacques;  Munoz, Alejandro Reyes;  Roberts, Richard J.;  Rossello-Mora, Ramon;  Sansone, Susanna-Assunta;  Schloss, Patrick D.;  Schriml, Lynn M.;  Setubal, Joao C.;  Sorek, Rotem;  Stevens, Rick L.;  Tiedje, James M.;  Turjanski, Adrian;  Tyson, Gene W.;  Ussery, David W.;  Weinstock, George M.;  White, Owen;  Whitman, William B.;  Xenarios, Ioannis
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Toward unrestricted use of public genomic data 期刊论文
SCIENCE, 2019, 363 (6425) : 350-+
作者:  Amann, Rudolf I.;  Baichoo, Shakuntala;  Blencowe, Benjamin J.;  Bork, Peer;  Borodovsky, Mark;  Brooksbank, Cath;  Chain, Patrick S. G.;  Colwell, Rita R.;  Daffonchio, Daniele G.;  Danchin, Antoine;  de Lorenzo, Victor;  Dorrestein, Pieter C.;  Finn, Robert D.;  Fraser, Claire M.;  Gilbert, Jack A.;  Hallam, Steven J.;  Hugenholtz, Philip;  Ioannidis, John P. A.;  Jansson, Janet K.;  Kim, Jihyun F.;  Klenk, Hans-Peter;  Klotz, Martin G.;  Knight, Rob;  Konstantinidis, Konstantinos T.;  Kyrpides, Nikos C.;  Mason, Christopher E.;  McHardy, Alice C.;  Meyer, Folker;  Ouzounis, Christos A.;  Patrinos, Aristides A. N.;  Podar, Mircea;  Pollard, Katherine S.;  Ravel, Jacques;  Munoz, Alejandro Reyes;  Roberts, Richard J.;  Rossello-Mora, Ramon;  Sansone, Susanna-Assunta;  Schloss, Patrick D.;  Schriml, Lynn M.;  Setubal, Jogo C.;  Sorek, Rotem;  Stevens, Rick L.;  Tiedje, James M.;  Turjanski, Adrian;  Tyson, Gene W.;  Ussery, David W.;  Weinstock, George M.;  White, Owen;  Whitman, William B.;  Xenarios, Ioannis
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Megahertz data collection from protein microcrystals at an X-ray free-electron laser 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Grunbein, Marie Luise;  Bielecki, Johan;  Gorel, Alexander;  Stricker, Miriam;  Bean, Richard;  Cammarata, Marco;  Doerner, Katerina;  Froehlich, Lars;  Hartmann, Elisabeth;  Hauf, Steffen;  Hilpert, Mario;  Kim, Yoonhee;  Kloos, Marco;  Letrun, Romain;  Messerschmidt, Marc;  Mills, Grant;  Kovacs, Gabriela Nass;  Ramilli, Marco;  Roome, Christopher M.;  Sato, Tokushi;  Scholz, Matthias;  Sliwa, Michel;  Sztuk-Dambietz, Jolanta;  Weik, Martin;  Weinhausen, Britta;  Al-Qudami, Nasser;  Boukhelef, Djelloul;  Brockhauser, Sandor;  Ehsan, Wajid;  Emons, Moritz;  Esenov, Sergey;  Fangohr, Hans;  Kaukher, Alexander;  Kluyver, Thomas;  Lederer, Max;  Maia, Luis;  Manetti, Maurizio;  Michelat, Thomas;  Muennich, Astrid;  Pallas, Florent;  Palmer, Guido;  Previtali, Gianpietro;  Raab, Natascha;  Silenzi, Alessandro;  Szuba, Janusz;  Venkatesan, Sandhya;  Wrona, Krzysztof;  Zhu, Jun;  Doak, R. Bruce;  Shoeman, Robert L.;  Foucar, Lutz;  Colletier, Jacques-Philippe;  Mancuso, Adrian P.;  Barends, Thomas R. M.;  Stan, Claudiu A.;  Schlichting, Ilme
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Remote measurement of canopy water content in giant sequoias (Sequoiadendron giganteum) during drought 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 419: 279-290
作者:  Martin, Roberta E.;  Asner, Gregory P.;  Francis, Emily;  Ambrose, Anthony;  Baxter, Wendy;  Das, Adrian J.;  Vaughn, Nicolas R.;  Paz-Kagan, Tarin;  Dawson, Todd;  Nydick, Koren;  Stephenson, Nathan L.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
California  Carnegie Airborne Observatory  Giant sequoia  Sierra Nevada mountains  
Leaf to landscape responses of giant sequoia to hotter drought: An introduction and synthesis for the special section 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 419: 249-256
作者:  Nydick, Koren R.;  Stephenson, Nathan L.;  Ambrose, Anthony R.;  Asner, Gregory P.;  Baxter, Wendy L.;  Das, Adrian J.;  Dawson, Todd;  Martin, Roberta E.;  Paz-Kagan, Tarin
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Adaptation  Climate change  Hotter drought  Giant sequoia  Refugia  Remote sensing  Sequoia and Kings Canyon National Parks  Vulnerability  
Landscape-scale variation in canopy water content of giant sequoias during drought 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 419: 291-304
作者:  Paz-Kagan, Tarin;  Vaughn, Nicholas R.;  Martin, Roberta E.;  Brodrick, Philip G.;  Stephenson, Nathan L.;  Das, Adrian J.;  Nydick, Koren R.;  Asner, Gregory P.
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Foliage status  Carnegie Airborne Observatory  Climate change  Imaging spectroscopy  Sequoia and Kings Canyon National Parks (SEKI)  
Detection of climate change-driven trends in phytoplankton phenology 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (1) : E101-E111
作者:  Henson, Stephanie A.;  Cole, Harriet S.;  Hopkins, Jason;  Martin, Adrian P.;  Yool, Andrew
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
bloom initiation  bloom timing  climate model  climate warming  ocean monitoring  RCP8.5  sustained observations  
Big in the benthos: Future change of seafloor community biomass in a global, body size-resolved model 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (9)
作者:  Yool, Andrew;  Martin, Adrian P.;  Anderson, Thomas R.;  Bett, Brian J.;  Jones, Daniel O. B.;  Ruhl, Henry A.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
allometric  benthic  ecology  future  global  model  particulate organic carbon flux  seafloor