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Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition 期刊论文
NATURE, 2020, 577 (7790) : 421-+
作者:  Xue, Jenny Y.;  Zhao, Yulei;  Aronowitz, Jordan;  Mai, Trang T.;  Vides, Alberto;  Qeriqi, Besnik;  Kim, Dongsung;  Li, Chuanchuan;  de Stanchina, Elisa;  Mazutis, Linas;  Risso, Davide;  Lito, Piro
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/03

KRAS GTPases are activated in one-third of cancers, and KRAS(G12C) is one of the most common activating alterations in lung adenocarcinoma(1,2). KRAS(G12C) inhibitors(3,4) are in phase-I clinical trials and early data show partial responses in nearly half of patients with lung cancer. How cancer cells bypass inhibition to prevent maximal response to therapy is not understood. Because KRAS(G12C) cycles between an active and inactive conformation(4-6), and the inhibitors bind only to the latter, we tested whether isogenic cell populations respond in a non-uniform manner by studying the effect of treatment at a single-cell resolution. Here we report that, shortly after treatment, some cancer cells are sequestered in a quiescent state with low KRAS activity, whereas others bypass this effect to resume proliferation. This rapid divergent response occurs because some quiescent cells produce new KRAS(G12C) in response to suppressed mitogen-activated protein kinase output. New KRAS(G12C) is maintained in its active, drug-insensitive state by epidermal growth factor receptor and aurora kinase signalling. Cells without these adaptive changes-or cells in which these changes are pharmacologically inhibited-remain sensitive to drug treatment, because new KRAS(G12C) is either not available or exists in its inactive, drug-sensitive state. The direct targeting of KRAS oncoproteins has been a longstanding objective in precision oncology. Our study uncovers a flexible non-uniform fitness mechanism that enables groups of cells within a population to rapidly bypass the effect of treatment. This adaptive process must be overcome if we are to achieve complete and durable responses in the clinic.


  
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.


  
Structure of SAGA and mechanism of TBP deposition on gene promoters 期刊论文
NATURE, 2020, 577 (7792) : 711-+
作者:  Xue, Jenny Y.;  Zhao, Yulei;  Aronowitz, Jordan;  Mai, Trang T.;  Vides, Alberto;  Qeriqi, Besnik;  Kim, Dongsung;  Li, Chuanchuan;  de Stanchina, Elisa;  Mazutis, Linas;  Risso, Davide;  Lito, Piro
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

SAGA (Spt-Ada-Gcn5-acetyltransferase) is a 19-subunit complex that stimulates transcription via two chromatin-modifying enzymatic modules and by delivering the TATA box binding protein (TBP) to nucleate the pre-initiation complex on DNA, a pivotal event in the expression of protein-encoding genes(1). Here we present the structure of yeast SAGA with bound TBP. The core of the complex is resolved at 3.5 angstrom resolution (0.143 Fourier shell correlation). The structure reveals the intricate network of interactions that coordinate the different functional domains of SAGA and resolves an octamer of histone-fold domains at the core of SAGA. This deformed octamer deviates considerably from the symmetrical analogue in the nucleosome and is precisely tuned to establish a peripheral site for TBP, where steric hindrance represses binding of spurious DNA. Complementary biochemical analysis points to a mechanism for TBP delivery and release from SAGA that requires transcription factor IIA and whose efficiency correlates with the affinity of DNA to TBP. We provide the foundations for understanding the specific delivery of TBP to gene promoters and the multiple roles of SAGA in regulating gene expression.


Structural studies on the yeast transcription coactivator complex SAGA (Spt-Ada-Gcn5-acetyltransferase) provide insights into the mechanism of initiation of regulated transcription by this multiprotein complex, which is conserved among eukaryotes.


  
Impacts of Convective Activity over the Tibetan Plateau on Plateau Vortex, Southwest Vortex, and Downstream Precipitation 期刊论文
JOURNAL OF THE ATMOSPHERIC SCIENCES, 2019, 76 (12) : 3803-3830
作者:  Fu, Shen-Ming;  Mai, Zi;  Sun, Jian-Hua;  Li, Wan-Li;  Ding, Yang;  Wang, Ya-Qiang
收藏  |  浏览/下载:8/0  |  提交时间:2020/02/17
Dynamics  
Space-time variability of drought over Vietnam 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2019, 39 (14) : 5437-5451
作者:  Le, Phong V. V.;  Tan Phan-Van;  Mai, Khiem V.;  Tran, Duc Q.
收藏  |  浏览/下载:13/0  |  提交时间:2020/02/17
drought  ENSO  variability  Vietnam  
Diversity of fungi in harvested forests 10 years after logging and burning: Polypore assemblages on different woody substrates 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 446: 63-70
作者:  Suominen, Mai;  Junninen, Kaisa;  Kouki, Jari
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Fire  Prescribed burning  Restoration  Bioenergy  Wood fungi  Forest management  Early seral  Early succession  Pine forest  
Quantifying Riverine Recharge Impacts on Redox Conditions and Arsenic Release in Groundwater Aquifers Along the Red River, Vietnam 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (8) : 6712-6728
作者:  Nghiem, Athena A.;  Stahl, Mason O.;  Mailloux, Brian J.;  Tran Thi Mai;  Pham Thi Trang;  Pham Hung Viet;  Harvey, Charles F.;  van Geen, Alexander;  Bostick, Benjamin C.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
How ecologists define drought, and why we should do better 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (10) : 3193-3200
作者:  Slette, Ingrid J.;  Post, Alison K.;  Awad, Mai;  Even, Trevor;  Punzalan, Arianna;  Williams, Sere;  Smith, Melinda D.;  Knapp, Alan K.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
climate  drought  literature review  precipitation  SPEI  
Monovalent manganese based anodes and co-solvent electrolyte for stable low-cost high-rate sodium-ion batteries 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Firouzi, Ali;  Qiao, Ruimin;  Motallebi, Shahrokh;  Valencia, Christian W.;  Israel, Hannah S.;  Fujimoto, Mai;  Wray, L. Andrew;  Chuang, Yi-De;  Yang, Wanli;  Wessells, Colin D.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Tree rings reveal hydroclimatic fingerprints of the Pacific Decadal Oscillation on the Tibetan Plateau 期刊论文
CLIMATE DYNAMICS, 2019, 53: 1023-1037
作者:  Lyu, Lixin;  Buentgen, Ulf;  Treydte, Kerstin;  Yu, Kailiang;  Liang, Hanxue;  Reinig, Frederick;  Nievergelt, Daniel;  Li, Mai-He;  Cherubini, Paolo
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/26
Climate dynamics  Dendroclimatology  Drought extremes  Hydroclimate  Proxy reconstruction  Relative humidity  Tree rings