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Bile acid metabolites control T(H)17 and T-reg cell differentiation (vol 576, pg 148, 2019) 期刊论文
NATURE, 2020, 579 (7798) : E7-E7
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/03
TGF-beta orchestrates fibrogenic and developmental EMTs via the RAS effector RREB1 期刊论文
NATURE, 2020, 577 (7791) : 566-+
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/03

Epithelial-to-mesenchymal transitions (EMTs) are phenotypic plasticity processes that confer migratory and invasive properties to epithelial cells during development, wound-healing, fibrosis and cancer(1-4). EMTs are driven by SNAIL, ZEB and TWIST transcription factors(5,6) together with microRNAs that balance this regulatory network(7,8). Transforming growth factor beta (TGF-beta) is a potent inducer of developmental and fibrogenic EMTs4,9,10. Aberrant TGF-beta signalling and EMT are implicated in the pathogenesis of renal fibrosis, alcoholic liver disease, non-alcoholic steatohepatitis, pulmonary fibrosis and cancer(4,11). TGF-beta depends on RAS and mitogen-activated protein kinase (MAPK) pathway inputs for the induction of EMTs12-19. Here we show how these signals coordinately trigger EMTs and integrate them with broader pathophysiological processes. We identify RAS-responsive element binding protein 1 (RREB1), a RAS transcriptional effector(20,21), as a key partner of TGF-beta-activated SMAD transcription factors in EMT. MAPK-activated RREB1 recruits TGF-beta-activated SMAD factors to SNAIL. Context-dependent chromatin accessibility dictates the ability of RREB1 and SMAD to activate additional genes that determine the nature of the resulting EMT. In carcinoma cells, TGF-beta-SMAD and RREB1 directly drive expression of SNAIL and fibrogenic factors stimulating myofibroblasts, promoting intratumoral fibrosis and supporting tumour growth. In mouse epiblast progenitors, Nodal-SMAD and RREB1 combine to induce expression of SNAIL and mesendoderm-differentiation genes that drive gastrulation. Thus, RREB1 provides a molecular link between RAS and TGF-beta pathways for coordinated induction of developmental and fibrogenic EMTs. These insights increase our understanding of the regulation of epithelial plasticity and its pathophysiological consequences in development, fibrosis and cancer.


RAS and TGF-beta pathways regulate distinct modes of epithelial-to-mesenchymal transition via RAS-responsive element binding protein 1.


  
Giant virus diversity and host interactions through global metagenomics 期刊论文
NATURE, 2020: 1-+
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

Analysis of metagenomics data revealed that large and giant viruses are globally widely distributed and are associated with most major eukaryotic lineages.


Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely derived from viral isolates that are co-cultivated with protists and algae. Here we reconstructed 2,074 NCLDV genomes from sampling sites across the globe by building on the rapidly increasing amount of publicly available metagenome data. This led to an 11-fold increase in phylogenetic diversity and a parallel 10-fold expansion in functional diversity. Analysis of 58,023 major capsid proteins from large and giant viruses using metagenomic data revealed the global distribution patterns and cosmopolitan nature of these viruses. The discovered viral genomes encoded a wide range of proteins with putative roles in photosynthesis and diverse substrate transport processes, indicating that host reprogramming is probably a common strategy in the NCLDVs. Furthermore, inferences of horizontal gene transfer connected viral lineages to diverse eukaryotic hosts. We anticipate that the global diversity of NCLDVs that we describe here will establish giant viruses-which are associated with most major eukaryotic lineages-as important players in ecosystems across Earth'  s biomes.


  
Internal Drainage Has Sustained Low-Relief Tibetan Landscapes Since the Early Miocene 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (15) : 8741-8752
作者:  Han, Zhongpeng;  Sinclair, Hugh D.;  Li, Yalin;  Wang, Chengshan;  Tao, Zui;  Qian, Xinyu;  Ning, Zijie;  Zhang, Jiawei;  Wen, Yixiong;  Lin, Jie;  Zhang, Baosen;  Xu, Ming;  Dai, Jingen;  Zhou, Aorigele;  Liang, Huimin;  Cao, Shuo
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
High Contribution of Secondary Brown Carbon to Aerosol Light Absorption in the Southeastern Margin of Tibetan Plateau 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (9) : 4962-4970
作者:  Wang, Qiyuan;  Han, Yongming;  Ye, Jianhuai;  Liu, Suixin;  Pongpiachan, Siwatt;  Zhang, Ningning;  Han, Yuemei;  Tian, Jie;  Wu, Cheng;  Long, Xin;  Zhang, Qian;  Zhang, Wenyan;  Zhao, Zhuzi;  Cao, Junji
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/26
Emission Characteristics of Primary Brown Carbon Absorption From Biomass and Coal Burning: Development of an Optical Emission Inventory for China 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2019, 124 (3) : 1879-1893
作者:  Tian, Jie;  Wang, Qiyuan;  Ni, Haiyan;  Wang, Meng;  Zhou, Yaqing;  Han, Yongming;  Shen, Zhenxing;  Pongpiachan, Siwatt;  Zhang, Ningning;  Zhao, Zhuzi;  Zhang, Qian;  Zhang, Yue;  Long, Xin;  Cao, Junji
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Historical logging alters soil fungal community composition and network in a tropical rainforest 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 433: 228-239
作者:  Chen, Jie;  Xu, Han;  He, Dan;  Li, Yide;  Luo, Tushou;  Yang, Hongguo;  Lin, Mingxian
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Forest management  Soil fungi  Tropical rainforest  Microbial network  Fungal guild  
Forest fire characteristics in China: Spatial patterns and determinants with thresholds 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 424: 345-354
作者:  Ying, Lingxiao;  Han, Jie;  Du, Yongsheng;  Shen, Zehao
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
Fire number  Burnt area  Influential factors  Climatic conditions  Fuel accumulation  Forest fire management  
Interannual variation in methane emissions from tropical wetlands triggered by repeated El Nino Southern Oscillation 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (11)
作者:  Zhu, Qiuan;  Peng, Changhui;  Ciais, Philippe;  Jiang, Hong;  Liu, Jinxun;  Bousquet, Philippe;  Li, Shiqin;  Chang, Jie;  Fang, Xiuqin;  Zhou, Xiaolu;  Chen, Huai;  Liu, Shirong;  Lin, Guanghui;  Gong, Peng;  Wang, Meng;  Wang, Han;  Xiang, Wenhua;  Chen, Jing
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
atmospheric methane  El Nino-Southern Oscillation  methane emission  tropical wetlands  
Human GLP-1 receptor transmembrane domain structure in complex with allosteric modulators 期刊论文
NATURE, 2017, 546 (7657) : 312-+
作者:  Song, Gaojie;  Yang, Dehua;  Wang, Yuxia;  de Graaf, Chris;  Zhou, Qingtong;  Jiang, Shanshan;  Liu, Kaiwen;  Cai, Xiaoqing;  Dai, Antao;  Lin, Guangyao;  Liu, Dongsheng;  Wu, Fan;  Wu, Yiran;  Zhao, Suwen;  Ye, Li;  Han, Gye Won;  Lau, Jesper;  Wu, Beili;  Hanson, Michael A.;  Liu, Zhi-Jie;  Wang, Ming-Wei;  Stevens, Raymond C.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09