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A metabolic pathway for bile acid dehydroxylation by the gut microbiome 期刊论文
NATURE, 2020
作者:  Zhong, Miao;  Tran, Kevin;  Min, Yimeng;  Wang, Chuanhao;  Wang, Ziyun;  Dinh, Cao-Thang;  De Luna, Phil;  Yu, Zongqian;  Rasouli, Armin Sedighian;  Brodersen, Peter;  Sun, Song;  Voznyy, Oleksandr;  Tan, Chih-Shan;  Askerka, Mikhail;  Che, Fanglin;  Liu, Min;  Seifitokaldani, Ali;  Pang, Yuanjie;  Lo, Shen-Chuan;  Ip, Alexander;  Ulissi, Zachary;  Sargent, Edward H.
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice-an important proof-of-principle for the engineering of gut microbial pathways.


The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 mu M and are known to block the growth ofClostridium difficile(1), promote hepatocellular carcinoma(2)and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.(3)). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids(4)  the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A-B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe-S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway intoClostridium sporogenes, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.


  
Evolutionary selection of biofilm-mediated extended phenotypes in Yersinia pestis in response to a fluctuating environment 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Cui, Yujun;  Schmid, Boris, V;  Cao, Hanli;  Dai, Xiang;  Du, Zongmin;  Easterday, W. Ryan;  Fang, Haihong;  Guo, Chenyi;  Huang, Shanqian;  Liu, Wanbing;  Qi, Zhizhen;  Song, Yajun;  Tian, Huaiyu;  Wang, Min;  Wu, Yarong;  Xu, Bing;  Yang, Chao;  Yang, Jing;  Yang, Xianwei;  Zhang, Qingwen;  Jakobsen, Kjetill S.;  Zhang, Yujiang;  Stenseth, Nils Chr;  Yang, Ruifu
收藏  |  浏览/下载:15/0  |  提交时间:2020/05/13
Canopy openness and topographic habitat drive tree seedling recruitment after snow damage in an old-growth subtropical forest 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 429: 493-502
作者:  Song, Xiaoyang;  Hogan, J. Aaron;  Lin, Luxiang;  Wen, Handong;  Cao, Min;  Yang, Jie
收藏  |  浏览/下载:12/0  |  提交时间:2019/04/09
Disturbance  Forest gap  Light  Regeneration  Seedling dynamics, topography, environmental filtering, Ailaoshan  
Interdecadal Change of the Impact of Eurasian Snow on Spring Precipitation Over Southern China 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2018, 123 (18) : 10073-10089
作者:  Jia, Xiaojing;  Cao, Ding Rui;  Ge, Jing Wen;  Wang, Min
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
spring precipitation  snow cover extent  interdecadal change  numerical model  
RAP2 mediates mechanoresponses of the Hippo pathway 期刊论文
NATURE, 2018, 560 (7720) : 655-+
作者:  Meng, Zhipeng;  Qiu, Yunjiang;  Lin, Kimberly C.;  Kumar, Aditya;  Placone, Jesse K.;  Fang, Cao;  Wang, Kuei-Chun;  Lu, Shicong;  Pan, Margaret;  Hong, Audrey W.;  Moroishi, Toshiro;  Luo, Min;  Plouffe, Steven W.;  Diao, Yarui;  Ye, Zhen;  Park, Hyun Woo;  Wang, Xiaoqiong;  Yu, Fa-Xing;  Chien, Shu;  Wang, Cun-Yu;  Ren, Bing;  Engler, Adam J.;  Guan, Kun-Liang
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Snow damage to the canopy facilitates alien weed invasion in a subtropical montane primary forest in southwestern China 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 391
作者:  Song, Xiaoyang;  Hogan, James Aaron;  Brown, Calum;  Cao, Min;  Yang, Jie
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
Invasive species  Light availability  Canopy openness  Ageratina adenophora  Subtropical forest  Seedling germination  Ailaoshan Forest Dynamics Plot