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RGF1 controls root meristem size through ROS signalling 期刊论文
NATURE, 2020, 577 (7788) : 85-+
作者:  Yamada, Masashi;  Han, Xinwei;  Benfey, Philip N.
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/03

The stem cell niche and the size of the root meristem in plants are maintained by intercellular interactions and signalling networks involving a peptide hormone, root meristem growth factor 1 (RGF1)(1). Understanding how RGF1 regulates the development of the root meristem is essential for understanding stem cell function. Although five receptors for RGF1 have been identified(2-4), the downstream signalling mechanism remains unknown. Here we report a series of signalling events that follow RGF1 activity. We find that the RGF1-receptor pathway controls the distribution of reactive oxygen species (ROS) along the developmental zones of the Arabidopsis root. We identify a previously uncharacterized transcription factor, RGF1-INDUCIBLE TRANSCRIPTION FACTOR 1 (RITF1), that has a central role in mediating RGF1 signalling. Manipulating RITF1 expression leads to the redistribution of ROS along the root developmental zones. Changes in ROS distribution in turn enhance the stability of the PLETHORA2 protein, a master regulator of root stem cells. Our results thus clearly depict a signalling cascade that is initiated by RGF1, linking this peptide to mechanisms that regulate ROS.


  
Targeting of temperate phages drives loss of type I CRISPR-Cas systems 期刊论文
NATURE, 2020, 578 (7793) : 149-+
作者:  Xiang, Lifeng;  Yin, Yu;  Zheng, Yun;  Ma, Yanping;  Li, Yonggang;  Zhao, Zhigang;  Guo, Junqiang;  Ai, Zongyong;  Niu, Yuyu;  Duan, Kui;  He, Jingjing;  Ren, Shuchao;  Wu, Dan;  Bai, Yun;  Shang, Zhouchun;  Dai, Xi;  Ji, Weizhi;  Li, Tianqing
收藏  |  浏览/下载:30/0  |  提交时间:2020/07/03

On infection of their host, temperate viruses that infect bacteria (bacteriophages  hereafter referred to as phages) enter either a lytic or a lysogenic cycle. The former results in lysis of bacterial cells and phage release (resulting in horizontal transmission), whereas lysogeny is characterized by the integration of the phage into the host genome, and dormancy (resulting in vertical transmission)(1). Previous co-culture experiments using bacteria and mutants of temperate phages that are locked in the lytic cycle have shown that CRISPR-Cas systems can efficiently eliminate the invading phages(2,3). Here we show that, when challenged with wild-type temperate phages (which can become lysogenic), type I CRISPR-Cas immune systems cannot eliminate the phages from the bacterial population. Furthermore, our data suggest that, in this context, CRISPR-Cas immune systems are maladaptive to the host, owing to the severe immunopathological effects that are brought about by imperfect matching of spacers to the integrated phage sequences (prophages). These fitness costs drive the loss of CRISPR-Cas from bacterial populations, unless the phage carries anti-CRISPR (acr) genes that suppress the immune system of the host. Using bioinformatics, we show that this imperfect targeting is likely to occur frequently in nature. These findings help to explain the patchy distribution of CRISPR-Cas immune systems within and between bacterial species, and highlight the strong selective benefits of phage-encoded acr genes for both the phage and the host under these circumstances.


CRISPR-Cas systems cannot eliminate temperate bacteriophages from bacterial populations and-in this context-the systems impose immunopathological costs on the host, creating selective pressures that may explain their patchy distribution in bacteria.


  
Human origins in a southern African palaeo-wetland and first migrations 期刊论文
Nature, 2019, 575: 185-189
作者:  Eva K. F. Chan;  Axel Timmermann;  Benedetta F. Baldi;  Andy E. Moore;  Ruth J. Lyons;  Sun-Seon Lee;  Anton M. F. Kalsbeek;  Desiree C. Petersen;  Hannes Rautenbach;  Hagen E. A. F枚rtsch;  M. S. Riana Bornman;  Vanessa M. Hayes
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Climatic controls of decomposition drive the global biogeography of forest-tree symbioses 期刊论文
Nature, 2019, 569: 404-408
作者:  B. S. Steidinger;  T. W. Crowther;  J. Liang;  M. E. Van Nuland;  G. D. A. Werner;  P. B. Reich;  G. J. Nabuurs;  S. de-Miguel;  M. Zhou;  N. Picard;  B. Herault;  X. Zhao;  C. Zhang;  D. Routh;  K. G. Peay;  GFBI consortium
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Chemically reversible isomerization of inorganic clusters 期刊论文
SCIENCE, 2019, 363 (6428) : 731-+
作者:  Williamson, Curtis B.;  Nevers, Douglas R.;  Nelson, Andrew;  Hadar, Ido;  Banin, Uri;  Hanrath, Tobias;  Robinson, Richard D.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Comment on "Impacts of species richness on productivity in a large-scale subtropical forest experiment" 期刊论文
SCIENCE, 2019, 363 (6423)
作者:  Yang, Hua;  Guo, Zhongling;  Chu, Xiuli;  Man, Rongzhou;  Chen, Jiaxin;  Liu, Chunjiang;  Tao, Jing;  Jiang, Yong
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Metallic iron limits silicate hydration in Earth’s transition zone 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (45) : 22526-22530
作者:  Feng Zhu;  Jie Li;  Jiachao Liu;  Junjie Dong;  and Zhenxian Liu
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
mantle transition zone  water budget  redox reaction  mantle oxidation state  deep hydrogen cycle  
Estimating species distribution and abundance in river networks using environmental DNA 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (46) : 11724-11729
作者:  Carraro, Luca;  Hartikainen, Hanna;  Jokela, Jukka;  Bertuzzo, Enrico;  Rinaldo, Andrea
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
species distribution model  ecohydrology  proliferative kidney disease  
Genomic and epidemiological monitoring of yellow fever virus transmission potential 期刊论文
SCIENCE, 2018, 361 (6405) : 894-+
作者:  Faria, N. R.;  Kraemer, M. U. G.;  Hill, S. C.;  de Jesus, J. Goes;  Aguiar, R. S.;  Iani, F. C. M.;  Xavier, J.;  Quick, J.;  du Plessis, L.;  Dellicour, S.;  Theze, J.;  Carvalho, R. D. O.;  Baele, G.;  Wu, C. -H.;  Silveira, P. P.;  Arruda, M. B.;  Pereira, M. A.;  Pereira, G. C.;  Lourenco, J.;  Obolski, U.;  Abade, L.;  Vasylyeva, T. I.;  Giovanetti, M.;  Yi, D.;  Weiss, D. J.;  Wint, G. R. W.;  Shearer, F. M.;  Funk, S.;  Nikolay, B.;  Fonseca, V.;  Adelino, T. E. R.;  Oliveira, M. A. A.;  Silva, M. V. F.;  Sacchetto, L.;  Figueiredo, P. O.;  Rezende, I. M.;  Mello, E. M.;  Said, R. F. C.;  Santos, D. A.;  Ferraz, M. L.;  Brito, M. G.;  Santana, L. F.;  Menezes, M. T.;  Brindeiro, R. M.;  Tanuri, A.;  dos Santos, F. C. P.;  Cunha, M. S.;  Nogueira, J. S.;  Rocco, I. M.;  da Costa, A. C.;  Komninakis, S. C. V.;  Azevedo, V.;  Chieppe, A. O.;  Araujo, E. S. M.;  Mendonca, M. C. L.;  dos Santos, C. C.;  dos Santos, C. D.;  Mares-Guia, A. M.;  Nogueira, R. M. R.;  Sequeira, P. C.;  Abreu, R. G.;  Garcia, M. H. O.;  Abreu, A. L.;  Okumoto, O.;  Kroon, E. G.;  de Albuquerque, C. F. C.;  Lewandowski, K.;  Pullan, S. T.;  Carroll, M.;  de Oliveira, T.;  Sabino, E. C.;  Souza, R. P.;  Suchard, M. A.;  Lemey, P.;  Trindade, G. S.;  Drumond, B. P.;  Filippis, A. M. B.;  Loman, N. J.;  Cauchemez, S.;  Alcantara, L. C. J.;  Pybus, O. G.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Atmospheric new particle formation from sulfuric acid and amines in a Chinese megacity 期刊论文
SCIENCE, 2018, 361 (6399) : 278-+
作者:  Yao, Lei;  Garmash, Olga;  Bianchi, Federico;  Zheng, Jun;  Yan, Chao;  Kontkanen, Jenni;  Junninen, Heikki;  Mazon, Stephany Buenrostro;  Ehn, Mikael;  Paasonen, Pauli;  Sipila, Mikko;  Wang, Mingyi;  Wang, Xinke;  Xiao, Shan;  Chen, Hangfei;  Lu, Yiqun;  Zhang, Bowen;  Wang, Dongfang;  Fu, Qingyan;  Geng, Fuhai;  Li, Li;  Wang, Hongli;  Qiao, Liping;  Yang, Xin;  Chen, Jianmin;  Kerminen, Veli-Matti;  Petaja, Tuukka;  Worsnop, Douglas R.;  Kulmala, Markku;  Wang, Lin
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27