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Early Holocene crop cultivation and landscape modification in Amazonia 期刊论文
NATURE, 2020, 581 (7807) : 190-+
作者:  Hendershot, J. Nicholas;  Smith, Jeffrey R.;  Anderson, Christopher B.;  Letten, Andrew D.;  Frishkoff, Luke O.;  Zook, Jim R.;  Fukami, Tadashi;  Daily, Gretchen C.
收藏  |  浏览/下载:32/0  |  提交时间:2020/07/03

The onset of plant cultivation is one of the most important cultural transitions in human history(1-4). Southwestern Amazonia has previously been proposed as an early centre of plant domestication, on the basis of molecular markers that show genetic similarities between domesticated plants and wild relatives(4-6). However, the nature of the early human occupation of southwestern Amazonia, and the history of plant cultivation in this region, are poorly understood. Here we document the cultivation of squash (Cucurbita sp.) at about 10,250 calibrated years before present (cal. yr bp), manioc (Manihot sp.) at about 10,350 cal. yr bp and maize (Zea mays) at about 6,850 cal. yr bp, in the Llanos de Moxos (Bolivia). We show that, starting at around 10,850 cal. yr bp, inhabitants of this region began to create a landscape that ultimately comprised approximately 4,700 artificial forest islands within a treeless, seasonally flooded savannah. Our results confirm that the Llanos de Moxos is a hotspot for early plant cultivation and demonstrate that-ever since their arrival in Amazonia-humans have markedly altered the landscape, with lasting repercussions for habitat heterogeneity and species conservation.


  
Bacterial coexistence driven by motility and spatial competition 期刊论文
NATURE, 2020, 578 (7796) : 588-+
作者:  Micke, P.;  Leopold, T.;  King, S. A.;  Benkler, E.;  Spiess, L. J.;  Schmoeger, L.;  Schwarz, M.;  Crespo Lopez-Urrutia, J. R.;  Schmidt, P. O.
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

Elucidating elementary mechanisms that underlie bacterial diversity is central to ecology(1,2) and microbiome research(3). Bacteria are known to coexist by metabolic specialization(4), cooperation(5) and cyclic warfare(6-8). Many species are also motile(9), which is studied in terms of mechanism(10,11), benefit(12,13), strategy(14,15), evolution(16,17) and ecology(18,19). Indeed, bacteria often compete for nutrient patches that become available periodically or by random disturbances(2,20,21). However, the role of bacterial motility in coexistence remains unexplored experimentally. Here we show that-for mixed bacterial populations that colonize nutrient patches-either population outcompetes the other when low in relative abundance. This inversion of the competitive hierarchy is caused by active segregation and spatial exclusion within the patch: a small fast-moving population can outcompete a large fast-growing population by impeding its migration into the patch, while a small fast-growing population can outcompete a large fast-moving population by expelling it from the initial contact area. The resulting spatial segregation is lost for weak growth-migration trade-offs and a lack of virgin space, but is robust to population ratio, density and chemotactic ability, and is observed in both laboratory and wild strains. These findings show that motility differences and their trade-offs with growth are sufficient to promote diversity, and suggest previously undescribed roles for motility in niche formation and collective expulsion-containment strategies beyond individual search and survival.


In mixed bacterial populations that colonize nutrient patches, a growth-migration trade-off can lead to spatial exclusion that provides an advantage to populations that become rare, thereby stabilizing the community.


  
Targeting of temperate phages drives loss of type I CRISPR-Cas systems 期刊论文
NATURE, 2020, 578 (7793) : 149-+
作者:  Xiang, Lifeng;  Yin, Yu;  Zheng, Yun;  Ma, Yanping;  Li, Yonggang;  Zhao, Zhigang;  Guo, Junqiang;  Ai, Zongyong;  Niu, Yuyu;  Duan, Kui;  He, Jingjing;  Ren, Shuchao;  Wu, Dan;  Bai, Yun;  Shang, Zhouchun;  Dai, Xi;  Ji, Weizhi;  Li, Tianqing
收藏  |  浏览/下载:27/0  |  提交时间:2020/07/03

On infection of their host, temperate viruses that infect bacteria (bacteriophages  hereafter referred to as phages) enter either a lytic or a lysogenic cycle. The former results in lysis of bacterial cells and phage release (resulting in horizontal transmission), whereas lysogeny is characterized by the integration of the phage into the host genome, and dormancy (resulting in vertical transmission)(1). Previous co-culture experiments using bacteria and mutants of temperate phages that are locked in the lytic cycle have shown that CRISPR-Cas systems can efficiently eliminate the invading phages(2,3). Here we show that, when challenged with wild-type temperate phages (which can become lysogenic), type I CRISPR-Cas immune systems cannot eliminate the phages from the bacterial population. Furthermore, our data suggest that, in this context, CRISPR-Cas immune systems are maladaptive to the host, owing to the severe immunopathological effects that are brought about by imperfect matching of spacers to the integrated phage sequences (prophages). These fitness costs drive the loss of CRISPR-Cas from bacterial populations, unless the phage carries anti-CRISPR (acr) genes that suppress the immune system of the host. Using bioinformatics, we show that this imperfect targeting is likely to occur frequently in nature. These findings help to explain the patchy distribution of CRISPR-Cas immune systems within and between bacterial species, and highlight the strong selective benefits of phage-encoded acr genes for both the phage and the host under these circumstances.


CRISPR-Cas systems cannot eliminate temperate bacteriophages from bacterial populations and-in this context-the systems impose immunopathological costs on the host, creating selective pressures that may explain their patchy distribution in bacteria.


  
Evolutionary flexibility in flooding response circuitry in angiosperms 期刊论文
SCIENCE, 2019, 365 (6459) : 1291-+
作者:  Reynoso, Mauricio A.;  Kajala, Kaisa;  Bajic, Marko;  West, Donnelly A.;  Pauluzzi, Germain;  Yao, Andrew I.;  Hatch, Kathryn;  Zumstein, Kristina;  Woodhouse, Margaret;  Rodriguez-Medina, Joel;  Sinha, Neelima;  Brady, Siobhan M.;  Deal, Roger B.;  Bailey-Serres, Julia
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Photochemical impacts of haze pollution in an urban environment 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (15) : 9699-9714
作者:  Hollaway, Michael;  Wild, Oliver;  Yang, Ting;  Sun, Yele;  Xu, Weiqi;  Xie, Conghui;  Whalley, Lisa;  Slater, Eloise;  Heard, Dwayne;  Liu, Dantong
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Mutation of a bHLH transcription factor allowed almond domestication 期刊论文
SCIENCE, 2019, 364 (6445) : 1095-+
作者:  Sanchez-Perez, R.;  Pavan, S.;  Mazzeo, R.;  Moldovan, C.;  Aiese Cigliano, R.;  Del Cueto, J.;  Ricciardi, F.;  Lotti, C.;  Ricciardi, L.;  Dicenta, F.;  Lopez-Marques, R. L.;  Moller, B. Lindberg
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Simulation of the chemical evolution of biomass burning organic aerosol 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (8) : 5403-5415
作者:  Theodoritsi, Georgia N.;  Pandis, Spyros N.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/26
Iodine speciation and size distribution in ambient aerosols at a coastal new particle formation hotspot in China 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (6) : 4025-4039
作者:  Yu, Huan;  Ren, Lili;  Huan, Xiangpeng;  Xie, Mingjie;  He, Jun;  Xiao, Hang
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/26
Elemental signatures of Australopithecus africanus teeth reveal seasonal dietary stress 期刊论文
NATURE, 2019, 572 (7767) : 112-+
作者:  Joannes-Boyau, Renaud;  Adams, Justin W.;  Austin, Christine;  Arora, Manish;  Moffat, Ian;  Herries, Andy I. R.;  Tonge, Matthew P.;  Benazzi, Stefano;  Evans, Alistair R.;  Kullmer, Ottmar;  Wroe, Stephen;  Dosseto, Anthony;  Fiorenza, Luca
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
Ancient goat genomes reveal mosaic domestication in the Fertile Crescent 期刊论文
SCIENCE, 2018, 361 (6397) : 85-87
作者:  Daly, Kevin G.;  Delser, Pierpaolo Maisano;  Mullin, Victoria E.;  Scheu, Amelie;  Mattiangeli, Valeria;  Teasdale, Matthew D.;  Hare, Andrew J.;  Burger, Joachim;  Verdugo, Marta Pereira;  Collins, Matthew J.;  Kehati, Ron;  Erek, Cevdet Merih;  Bar-Oz, Guy;  Pompanon, Francois;  Cumer, Tristan;  Cakirlar, Canan;  Mohaseb, Azadeh Fatemeh;  Decruyenaere, Delphine;  Davoudi, Hossein;  Cevik, Ozlem;  Rollefson, Gary;  Vigne, Jean-Denis;  Khazaeli, Roya;  Fathi, Homa;  Doost, Sanaz Beizaee;  Sorkhani, Roghayeh Rahimi;  Vahdati, Ali Akbar;  Sauer, Eberhard W.;  Kharanaghi, Hossein Azizi;  Maziar, Sepideh;  Gasparian, Boris;  Pinhasi, Ron;  Martin, Louise;  Orton, David;  Arbuckle, Benjamin S.;  Benecke, Norbert;  Manica, Andrea;  Horwitz, Liora Kolska;  Mashkour, Marjan;  Bradley, Daniel G.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27