Global S&T Development Trend Analysis Platform of Resources and Environment
DOI | 10.1038/s41467-017-01227-7 |
Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses | |
Liang, Zhenchang1,2; Duan, Shengchang3,4; Sheng, Jun3,5,6; Zhu, Shusheng3,6; Ni, Xuemei7,8; Shao, Jianhui6; Liu, Chonghuai9; Nick, Peter10; Du, Fei6; Fan, Peige1; Mao, Ruzhi6; Zhu, Yifan3,6; Deng, Weiping6; Yang, Min6; Huang, Huichuan6; Liu, Yixiang6; Ding, Yiqing1,11; Liu, Xianju1,11; Jiang, Jianfu9; Zhu, Youyong3,5,6; Li, Shaohua1; He, Xiahong3,6; Chen, Wei3,5; Dong, Yang3,5 | |
2019-03-13 | |
发表期刊 | NATURE COMMUNICATIONS |
ISSN | 2041-1723 |
出版年 | 2019 |
卷号 | 10 |
文章类型 | Article |
语种 | 英语 |
国家 | Peoples R China; Germany |
英文摘要 | Understanding the Vitis species at the genomic level is important for cultivar improvement of grapevine. Here we report whole-genome genetic variation at single-base resolution of 472 Vitis accessions, which cover 48 out of 60 extant Vitis species from a wide geographic distribution. The variation helps to identify a recent dramatic expansion and contraction of effective population size in the domesticated grapevines and that cultivars from the pan Black Sea region have a unique demographic history in comparison to the other domesticated cultivars. We also find selective sweeps for berry edibility and stress resistance improvement. Furthermore, we find associations between candidate genes and important agronomic traits, such as berry shape and aromatic compounds. These results demonstrate resource value of the resequencing data for illuminating the evolutionary biology of Vitis species and providing targets for grapevine genetic improvement. |
领域 | 资源环境 |
收录类别 | SCI-E |
WOS记录号 | WOS:000461022600003 |
WOS关键词 | GENETIC DIVERSITY ; DOMESTICATION HISTORY ; PHYLOGENETIC ANALYSIS ; WILD ; VINIFERA ; REVEALS ; ASSOCIATION ; THOUSANDS ; ALIGNMENT ; MUTATION |
WOS类目 | Multidisciplinary Sciences |
WOS研究方向 | Science & Technology - Other Topics |
URL | 查看原文 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://119.78.100.173/C666/handle/2XK7JSWQ/203463 |
专题 | 资源环境科学 |
作者单位 | 1.Chinese Acad Sci, Inst Bot, Beijing Key Lab Grape Sci & Enol, Lab Plant Resources, Beijing 100093, Peoples R China; 2.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Hubei, Peoples R China; 3.Yunnan Agr Univ, State Key Lab Conservat & Utilizat Bioresources, Kunming 650201, Yunnan, Peoples R China; 4.Nowbio Biotechnol Co, Kunming 650201, Yunnan, Peoples R China; 5.Yunnan Res Inst Local Plateau Agr & Ind, Kunming 650201, Yunnan, Peoples R China; 6.Yunnan Agr Univ, Key Lab Agro Biodivers & Pest Control, Minist Educ, Kunming 650201, Yunnan, Peoples R China; 7.BGI Shenzhen, BGI, Shenzhen 518120, Peoples R China; 8.BGI Shenzhen, BGI Inst Appl Agr, Shenzhen 518120, Peoples R China; 9.Chinese Acad Agr Sci, Zhengzhou Fruit Res Inst, Zhengzhou 450009, Henan, Peoples R China; 10.Karlsruhe Inst Technol, Bot Inst, D-76128 Karlsruhe, Germany; 11.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
推荐引用方式 GB/T 7714 | Liang, Zhenchang,Duan, Shengchang,Sheng, Jun,et al. Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses[J]. NATURE COMMUNICATIONS,2019,10. |
APA | Liang, Zhenchang.,Duan, Shengchang.,Sheng, Jun.,Zhu, Shusheng.,Ni, Xuemei.,...&Dong, Yang.(2019).Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses.NATURE COMMUNICATIONS,10. |
MLA | Liang, Zhenchang,et al."Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses".NATURE COMMUNICATIONS 10(2019). |
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