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Empirical Models for Predicting Water and Heat Flow Properties of Permafrost Soils 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (11)
作者:  O&;  39;Connor, Michael T.
收藏  |  浏览/下载:7/0  |  提交时间:2020/05/20
active layer  hydraulic conductivity  permafrost  porosity  soil  thermal conductivity  
Long-term ecological consequences of forest fires in the continuous permafrost zone of Siberia 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2020, 15 (3)
作者:  Kirdyanov, Alexander, V;  Saurer, Matthias;  Siegwolf, Rolf;  Knorre, Anastasia A.;  Prokushkin, Anatoly S.;  (Sidorova), Olga V. Churakova;  Fonti, Marina, V;  Buentgen, Ulf
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/02
active soil layer  boreal forest  permafrost  Siberia  stable isotopes  tree rings  wildfire  
Recurrent interactions in local cortical circuits 期刊论文
NATURE, 2020, 579 (7798) : 256-+
作者:  Liu, Yang;  Nguyen, Phong T.;  Wang, Xun;  Zhao, Yuting;  Meacham, Corbin E.;  Zou, Zhongju;  Bordieanu, Bogdan;  Johanns, Manuel;  Vertommen, Didier;  Wijshake, Tobias;  May, Herman;  Xiao, Guanghua;  Shoji-Kawata, Sanae;  Rider, Mark H.
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

Most cortical synapses are local and excitatory. Local recurrent circuits could implement amplification, allowing pattern completion and other computations(1-4). Cortical circuits contain subnetworks that consist of neurons with similar receptive fields and increased connectivity relative to the network average(5,6). Cortical neurons that encode different types of information are spatially intermingled and distributed over large brain volumes(5-7), and this complexity has hindered attempts to probe the function of these subnetworks by perturbing them individually(8). Here we use computational modelling, optical recordings and manipulations to probe the function of recurrent coupling in layer 2/3 of the mouse vibrissal somatosensory cortex during active tactile discrimination. A neural circuit model of layer 2/3 revealed that recurrent excitation enhances sensory signals by amplification, but only for subnetworks with increased connectivity. Model networks with high amplification were sensitive to damage: loss of a few members of the subnetwork degraded stimulus encoding. We tested this prediction by mapping neuronal selectivity(7) and photoablating(9,10) neurons with specific selectivity. Ablation of a small proportion of layer 2/3 neurons (10-20, less than 5% of the total) representing touch markedly reduced responses in the spared touch representation, but not in other representations. Ablations most strongly affected neurons with stimulus responses that were similar to those of the ablated population, which is also consistent with network models. Recurrence among cortical neurons with similar selectivity therefore drives input-specific amplification during behaviour.


Computational modelling, imaging and single-cell ablation in layer 2/3 of the mouse vibrissal somatosensory cortex reveals that recurrent activity in cortical neurons can drive input-specific amplification during behaviour.


  
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids 期刊论文
NATURE, 2020
作者:  Nixon, Christopher C.;  Mavigner, Maud;  Sampey, Gavin C.;  Brooks, Alyssa D.;  Spagnuolo, Rae Ann;  Irlbeck, David M.;  Mattingly, Cameron;  Ho, Phong T.;  Schoof, Nils;  Cammon, Corinne G.;  Tharp, Greg K.;  Kanke, Matthew;  Wang, Zhang;  Cleary, Rachel A.;  Upadhyay, Amit A.;  De, Chandrav;  Wills, Saintedym R.;  Falcinelli, Shane D.;  Galardi, Cristin;  Walum, Hasse;  Schramm, Nathaniel J.;  Deutsch, Jennifer;  Lifson, Jeffrey D.;  Fennessey, Christine M.;  Keele, Brandon F.;  Jean, Sherrie;  Maguire, Sean;  Liao, Baolin;  Browne, Edward P.;  Ferris, Robert G.;  Brehm, Jessica H.;  Favre, David;  Vanderford, Thomas H.;  Bosinger, Steven E.;  Jones, Corbin D.;  Routy, Jean-Pierre;  Archin, Nancie M.;  Margolis, David M.;  Wahl, Angela;  Dunham, Richard M.;  Silvestri, Guido;  Chahroudi, Ann;  Garcia, J. Victor
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

Single-cell RNA sequencing and spatial transcriptomics reveal that the somitogenesis clock is active in mouse gastruloids, which can be induced to generate somites with the correct rostral-caudal patterning.


Gastruloids are three-dimensional aggregates of embryonic stem cells that display key features of mammalian development after implantation, including germ-layer specification and axial organization(1-3). To date, the expression pattern of only a small number of genes in gastruloids has been explored with microscopy, and the extent to which genome-wide expression patterns in gastruloids mimic those in embryos is unclear. Here we compare mouse gastruloids with mouse embryos using single-cell RNA sequencing and spatial transcriptomics. We identify various embryonic cell types that were not previously known to be present in gastruloids, and show that key regulators of somitogenesis are expressed similarly between embryos and gastruloids. Using live imaging, we show that the somitogenesis clock is active in gastruloids and has dynamics that resemble those in vivo. Because gastruloids can be grown in large quantities, we performed a small screen that revealed how reduced FGF signalling induces a short-tail phenotype in embryos. Finally, we demonstrate that embedding in Matrigel induces gastruloids to generate somites with the correct rostral-caudal patterning, which appear sequentially in an anterior-to-posterior direction over time. This study thus shows the power of gastruloids as a model system for exploring development and somitogenesis in vitro in a high-throughput manner.


  
An orbital water-ice cycle on comet 67P from colour changes 期刊论文
NATURE, 2020, 578 (7793) : 49-+
作者:  Oh, Myoung Hwan;  Cho, Min Gee;  Chung, Dong Young;  Park, Inchul;  Kwon, Youngwook Paul;  Ophus, Colin;  Kim, Dokyoon;  Kim, Min Gyu;  Jeong, Beomgyun;  Gu, X. Wendy;  Jo, Jinwoung;  Yoo, Ji Mun;  Hong, Jaeyoung;  McMains, Sara;  Kang, Kisuk;  Sung, Yung-Eun;  Alivisatos, A. Paul;  Hyeon, Taeghwan
收藏  |  浏览/下载:52/0  |  提交时间:2020/07/03

Solar heating of a cometary surface provides the energy necessary to sustain gaseous activity, through which dust is removed(1,2). In this dynamical environment, both the coma(3,4) and the nucleus(5,6) evolve during the orbit, changing their physical and compositional properties. The environment around an active nucleus is populated by dust grains with complex and variegated shapes(7), lifted and diffused by gases freed from the sublimation of surface ices(8,9). The visible colour of dust particles is highly variable: carbonaceous organic material-rich grains(10) appear red while magnesium silicate-rich(11,12) and water-ice-rich(13,14) grains appear blue, with some dependence on grain size distribution, viewing geometry, activity level and comet family type. We know that local colour changes are associated with grain size variations, such as in the bluer jets made of submicrometre grains on comet Hale-Bopp(15) or in the fragmented grains in the coma(16) of C/1999 S4 (LINEAR). Apart from grain size, composition also influences the coma'  s colour response, because transparent volatiles can introduce a substantial blueing in scattered light, as observed in the dust particles ejected after the collision of the Deep Impact probe with comet 9P/Tempel 1(17). Here we report observations of two opposite seasonal colour cycles in the coma and on the surface of comet 67P/Churyumov-Gerasimenko through its perihelion passage(18). Spectral analysis indicates an enrichment of submicrometre grains made of organic material and amorphous carbon in the coma, causing reddening during the passage. At the same time, the progressive removal of dust from the nucleus causes the exposure of more pristine and bluish icy layers on the surface. Far from the Sun, we find that the abundance of water ice on the nucleus is reduced owing to redeposition of dust and dehydration of the surface layer while the coma becomes less red.


  
Projected Changes in Permafrost Active Layer Thickness Over the Qinghai-Tibet Plateau Under Climate Change 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (9) : 7860-7875
作者:  Zhao, Dongsheng;  Wu, Shaohong
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
active layer thickness  permafrost  climate change  Qinghai-Tibet Plateau  
Inference of the impact of wildfire on permafrost and active layer thickness in a discontinuous permafrost region using the remotely sensed active layer thickness (ReSALT) algorithm 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2019, 14 (3)
作者:  Michaelides, Roger J.;  Schaefer, Kevin;  Zebker, Howard A.;  Parsekian, Andrew;  Liu, Lin;  Chen, Jingyi;  Natali, Susan;  Ludwig, Sarah;  Schaefer, Sean R.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
permafrost  wildfire  InSAR  radar remote sensing  geophysics  active layer  Arctic  
Impact of dynamic vegetation phenology on the simulated pan-Arctic land surface state 期刊论文
CLIMATE DYNAMICS, 2019, 52: 373-388
作者:  Teufel, Bernardo;  Sushama, Laxmi;  Arora, Vivek K.;  Verseghy, Diana
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Dynamic vegetation model  Albedo  Permafrost  Active layer thickness  Climate change  
Respiration of aged soil carbon during fall in permafrost peatlands enhanced by active layer deepening following wildfire but limited following thermokarst 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2018, 13 (8)
作者:  Estop-Aragones, Cristian;  Czimczik, Claudia I.;  Heffernan, Liam;  Gibson, Carolyn;  Walker, Jennifer C.;  Xu, Xiaomei;  Olefeldt, David
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
permafrost thaw  wildfire  peatlands  active layer deepening  thermokarst  soil organic carbon  radiocarbon  
GPS Interferometric Reflectometry Reveals Cyclic Elevation Changes in Thaw and Freezing Seasons in a Permafrost Area (Barrow, Alaska) 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2018, 45 (11) : 5581-5589
作者:  Hu, Yufeng;  Liu, Lin;  Larson, Kristine M.;  Schaefer, Kevin M.;  Zhang, Jiahua;  Yao, Yibin
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
active layer  thawing and freezing  GPS-IR  cyclic elevation change  composite model