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Substrate regulation leads to differential responses of microbial ammonia-oxidizing communities to ocean warming 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Zheng, Zhen-Zhen;  Zheng, Li-Wei;  Xu, Min Nina;  Tan, Ehui;  Hutchins, David A.;  Deng, Wenchao;  Zhang, Yao;  Shi, Dalin;  Dai, Minhan;  Kao, Shuh-Ji
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/21
Upper Midwest lakes are supersaturated with N-2 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (29) : 17063-17067
作者:  Loeks-Johnson, Brianna M.;  Cotner, James B.
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/09
denitrification  nitrogen fixation  nitrogen cycling  biogeochemistry  
Geometry and evolution of the ecological niche in plant-associated microbes 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Chaloner, Thomas M.;  Gurr, Sarah J.;  Bebber, Daniel P.
收藏  |  浏览/下载:7/0  |  提交时间:2020/06/16
A multiomic analysis of in situ coral-turf algal interactions 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (24) : 13588-13595
作者:  Roach, Ty N. F.;  Little, Mark;  Arts, Milou G. I.;  Huckeba, Joel;  Haas, Andreas F.;  George, Emma E.;  Quinn, Robert A.;  Cobian-Guemes, Ana G.;  Naliboff, Douglas S.;  Silveria, Cynthia B.;  Vermeij, Mark J. A.;  Kelly, Linda Wegley;  Dorrestein, Pieter C.;  Rohwer, Forest
收藏  |  浏览/下载:9/0  |  提交时间:2020/06/09
holobiont  metabolomics  metagenomics  microbial ecology  coral reefs  
Abiotic hydrogen (H-2) sources and sinks near the Mid-Ocean Ridge (MOR) with implications for the subseafloor biosphere 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (24) : 13283-13293
作者:  Worman, Stacey L.;  Pratson, Lincoln F.;  Karson, Jeffrey A.;  Schlesinger, William H.
收藏  |  浏览/下载:10/0  |  提交时间:2020/06/09
biogeochemistry  origins of life  hydrogen  Mid-Ocean Ridge  microbes  
High levels of primary biogenic organic aerosols are driven by only a few plant-associated microbial taxa 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (9) : 5609-5628
作者:  Samake, Abdoulaye;  Bonin, Aurelie;  Jaffrezo, Jean-Luc;  Taberlet, Pierre;  Weber, Samuel;  Uzu, Gaelle;  Jacob, Veronique;  Conil, Sebastien;  Martins, Jean M. F.
收藏  |  浏览/下载:12/0  |  提交时间:2020/05/20
Global radiation in a rare biosphere soil diatom 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Pinseel, Eveline;  Janssens, Steven B.;  Verleyen, Elie;  Vanormelingen, Pieter;  Kohler, Tyler J.;  Biersma, Elisabeth M.;  Sabbe, Koen;  Van de Vijver, Bart;  Vyverman, Wim
收藏  |  浏览/下载:7/0  |  提交时间:2020/05/20
A metabolic pathway for bile acid dehydroxylation by the gut microbiome 期刊论文
NATURE, 2020
作者:  Zhong, Miao;  Tran, Kevin;  Min, Yimeng;  Wang, Chuanhao;  Wang, Ziyun;  Dinh, Cao-Thang;  De Luna, Phil;  Yu, Zongqian;  Rasouli, Armin Sedighian;  Brodersen, Peter;  Sun, Song;  Voznyy, Oleksandr;  Tan, Chih-Shan;  Askerka, Mikhail;  Che, Fanglin;  Liu, Min;  Seifitokaldani, Ali;  Pang, Yuanjie;  Lo, Shen-Chuan;  Ip, Alexander;  Ulissi, Zachary;  Sargent, Edward H.
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice-an important proof-of-principle for the engineering of gut microbial pathways.


The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 mu M and are known to block the growth ofClostridium difficile(1), promote hepatocellular carcinoma(2)and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.(3)). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids(4)  the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A-B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe-S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway intoClostridium sporogenes, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.


  
Herbivory meets fungivory: insect herbivores feed on plant pathogenic fungi for their own benefit 期刊论文
ECOLOGY LETTERS, 2020, 23 (7) : 1073-1084
作者:  Eberl, Franziska;  de Bobadilla, Maite Fernandez;  Reichelt, Michael;  Hammerbacher, Almuth;  Gershenzon, Jonathan;  Unsicker, Sybille B.
收藏  |  浏览/下载:6/0  |  提交时间:2020/05/13
gypsy moth  mycophagy  nutritional ecology  rust fungus  Salicaceae  tripartite interaction  
Functional roles of microbial symbionts in plant cold tolerance 期刊论文
ECOLOGY LETTERS, 2020, 23 (6) : 1034-1048
作者:  Acuna-Rodriguez, Ian S.;  Newsham, Kevin K.;  Gundel, Pedro E.;  Torres-Diaz, Cristian;  Molina-Montenegro, Marco A.
收藏  |  浏览/下载:7/0  |  提交时间:2020/05/13
Arbuscular mycorrhizas  bacteria  cold stress  endophytes  freezing  fungi  symbiosis