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A multiomic analysis of in situ coral-turf algal interactions 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (24) : 13588-13595
作者:  Roach, Ty N. F.;  Little, Mark;  Arts, Milou G. I.;  Huckeba, Joel;  Haas, Andreas F.;  George, Emma E.;  Quinn, Robert A.;  Cobian-Guemes, Ana G.;  Naliboff, Douglas S.;  Silveria, Cynthia B.;  Vermeij, Mark J. A.;  Kelly, Linda Wegley;  Dorrestein, Pieter C.;  Rohwer, Forest
收藏  |  浏览/下载:9/0  |  提交时间:2020/06/09
holobiont  metabolomics  metagenomics  microbial ecology  coral reefs  
The arms race between bacteria and their phage foes 期刊论文
NATURE, 2020, 577 (7790) : 327-336
作者:  Hirschey, Matthew
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

Bacteria are under immense evolutionary pressure from their viral invaders-bacteriophages. Bacteria have evolved numerous immune mechanisms, both innate and adaptive, to cope with this pressure. The discovery and exploitation of CRISPR-Cas systems have stimulated a resurgence in the identification and characterization of anti-phage mechanisms. Bacteriophages use an extensive battery of counter-defence strategies to co-exist in the presence of these diverse phage defence mechanisms. Understanding the dynamics of the interactions between these microorganisms has implications for phage-based therapies, microbial ecology and evolution, and the development of new biotechnological tools. Here we review the spectrum of anti-phage systems and highlight their evasion by bacteriophages.


  
Resistance of soil biota and plant growth to disturbance increases with plant diversity 期刊论文
ECOLOGY LETTERS, 2019
作者:  Bennett, Jonathan A.;  Koch, Alexander M.;  Forsythe, Jennifer;  Johnson, Nancy C.;  Tilman, David;  Klironomos, John
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Bacteria  fungi  microbial ecology  mycorrhizas  nematodes  plant diversity  primary productivity  resistance  soil biota  stability  
The fitness of chemotrophs increases when their catabolic by-products are consumed by other species 期刊论文
ECOLOGY LETTERS, 2019
作者:  Seto, Mayumi;  Yoh, Iwasa
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Abundant Resource Premium  chemotrophs  material network  mathematical model  microbial ecology  mutualism  niche construction  niche expansion  syntrophy  
Prolonged exposure to manure from livestock-administered antibiotics decreases ecosystem carbon-use efficiency and alters nitrogen cycling 期刊论文
ECOLOGY LETTERS, 2019
作者:  Wepking, Carl;  Badgley, Brian;  Barrett, John E.;  Knowlton, Katharine F.;  Lucas, Jane M.;  Minick, Kevan J.;  Ray, Partha P.;  Shawver, Sarah E.;  Strickland, Michael S.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Agroecology  antibiotics  ecosystem function  elemental cycles  microbial ecology  stable isotopes  
Effects of plant functional group removal on structure and function of soil communities across contrasting ecosystems 期刊论文
ECOLOGY LETTERS, 2019, 22 (7) : 1095-1103
作者:  Fanin, Nicolas;  Kardol, Paul;  Farrell, Mark;  Kempel, Anne;  Ciobanu, Marcel;  Nilsson, Marie-Charlotte;  Gundale, Michael J.;  Wardle, David A.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
Biodiversity  decomposition  ecosystem functioning  metabarcoding  microbial ecology  nematodes  organic matter accumulation  plant-soil interactions  
Mixed Eucalyptus plantations induce changes in microbial communities and increase biological functions in the soil and litter layers 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 433: 332-342
作者:  Pereira, Arthur P. A.;  Durrer, Ademir;  Gumiere, Thiago;  Goncalves, Jose L. M.;  Robin, Agnes;  Bouillet, Jean-Pierre;  Wang, Juntao;  Verma, Jay P.;  Singh, Brajesh K.;  Cardoso, Elke J. B. N.
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
Forest ecosystems  Mixed forest  Nutrient cycling  Microbial diversity and ecology  Eucalyptus sustainability  
Microbial ecosystem dynamics drive fluctuating nitrogen loss in marine anoxic zones 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (15) : 7220-7225
作者:  Penn, Justin L.;  Weber, Thomas;  Chang, Bonnie X.;  Deutsch, Curtis
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/27
microbial ecology  oxygen minimum zones  nitrogen cycle  species oscillations  
Redox-dependent niche differentiation provides evidence for multiple bacterial sources of glycerol tetraether lipids in lakes 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (43) : 10926-10931
作者:  Weber, Yuki;  Damste, Jaap S. Sinninghe;  Zopfi, Jakob;  De Jonge, Cindy;  Gilli, Adrian;  Schubert, Carsten J.;  Lepori, Fabio;  Lehmann, Moritz F.;  Niemann, Helge
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
paleoclimate  lakes  GDGT  delta C-13  microbial ecology  
Continental-scale nitrogen pollution is shifting forest mycorrhizal associations and soil carbon stocks 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (10) : 4544-4553
作者:  Averill, Colin;  Dietze, Michael C.;  Bhatnagar, Jennifer M.
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
forest ecology  microbial ecology  mycorrhizal fungi  nitrogen deposition  nutrient limitation  soil carbon storage