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Zucchini consensus motifs determine the mechanism of pre-piRNA production 期刊论文
NATURE, 2020, 578 (7794) : 311-+
作者:  Clark, Timothy D.;  Raby, Graham D.;  Roche, Dominique G.;  Binning, Sandra A.;  Speers-Roesch, Ben;  Jutfelt, Fredrik;  Sundin, Josefin
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

PIWI-interacting RNAs (piRNAs) of between approximately 24 and 31 nucleotides in length guide PIWI proteins to silence transposons in animal gonads, thereby ensuring fertility(1). In the biogenesis of piRNAs, PIWI proteins are first loaded with 5 '  -monophosphorylated RNA fragments called pre-pre-piRNAs, which then undergo endonucleolytic cleavage to produce pre-piRNAs(1,2). Subsequently, the 3 '  -ends of pre-piRNAs are trimmed by the exonuclease Trimmer (PNLDC1 in mouse)(3-6) and 2 '  -O-methylated by the methyltransferase Hen1 (HENMT1 in mouse)(7-9), generating mature piRNAs. It is assumed that the endonuclease Zucchini (MitoPLD in mouse) is a major enzyme catalysing the cleavage of pre-pre-piRNAs into pre-piRNAs(10-13). However, direct evidence for this model is lacking, and how pre-piRNAs are generated remains unclear. Here, to analyse pre-piRNA production, we established a Trimmer-knockout silkworm cell line and derived a cell-free system that faithfully recapitulates Zucchini-mediated cleavage of PIWI-loaded pre-pre-piRNAs. We found that pre-piRNAs are generated by parallel Zucchini-dependent and -independent mechanisms. Cleavage by Zucchini occurs at previously unrecognized consensus motifs on pre-pre-piRNAs, requires the RNA helicase Armitage, and is accompanied by 2 '  -O-methylation of pre-piRNAs. By contrast, slicing of pre-pre-piRNAs with weak Zucchini motifs is achieved by downstream complementary piRNAs, producing pre-piRNAs without 2 '  -O-methylation. Regardless of the endonucleolytic mechanism, pre-piRNAs are matured by Trimmer and Hen1. Our findings highlight multiplexed processing of piRNA precursors that supports robust and flexible piRNA biogenesis.


A silkworm model recapitulates key steps of Zucchini-mediated cleavage of pre-pre-piRNA and provides insights into Zucchini-mediated and -independent pathways that generate pre-piRNAs, which converge to a common piRNA maturation step.


  
Soil productivity drivers in New Zealand planted forests 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 449
作者:  Beets, P. N.;  Kimberley, M. O.;  Garrett, L. G.;  Paul, T. S. H.;  Matson, A. L.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
Forest productivity  Soil  Soil fertility  Pinus radiata  New Zealand  
Climatic variability and changing reproductive goals in Sub-Saharan Africa 期刊论文
GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS, 2019, 57
作者:  Eissler, Sarah;  Thiede, Brian C.;  Strube, Johann
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
Climate change  Climatic variability  Fertility  Fertility preferences  Sub-Saharan Africa  
Impacts of integrated soil fertility management on yield and household income: The case of Tamale (Ghana) and Kakamega (Kenya) 期刊论文
ECOLOGICAL ECONOMICS, 2019, 161: 186-192
作者:  Adolwa, Ivan Solomon;  Schwarze, Stefan;  Buerkert, Andreas
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27
Impact assessment  Inverse-probability-weighted regression adjustment  Integrated soil fertility management  Maize yield  Total household income  Sub-Saharan Africa  
The impact of climate change on fertility 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2019, 14 (5)
作者:  Casey, Gregory;  Shayegh, Soheil;  Moreno-Cruz, Juan;  Bunzl, Martin;  Galor, Oded;  Caldeira, Ken
收藏  |  浏览/下载:3/0  |  提交时间:2019/11/26
climate change  economics  education  fertility  inequality  
Litter quality, land-use history, and nitrogen deposition effects on topsoil conditions across European temperate deciduous forests 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 433: 405-418
作者:  Maes, Sybryn L.;  Blondeel, Haben;  Perring, Michael P.;  Depauw, Leen;  Brumelis, Guntis;  Brunet, Jorg;  Decocq, Guillaume;  den Ouden, Jan;  Haerdtle, Werner;  Hedl, Radim;  Heinken, Thilo;  Heinrichs, Steffi;  Jaroszewicz, Bogdan;  Kirby, Keith;  Kopecky, Martin;  Malis, Frantisek;  Wulf, Monika;  Verheyen, Kris
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
Soil fertility  Ancient forest  Post-agricultural forest  Coppice  High forest  pH  Phosphorus  Base cations  Nutrient cycling  Decomposition  
Modelling the nutrient cost of biomass harvesting under different silvicultural and climate scenarios in production forests 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 429: 642-653
作者:  Achat, David L.;  Martel, Simon;  Picart, Delphine;  Moisy, Christophe;  Augusto, Laurent;  Bakker, Mark R.;  Loustau, Denis
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Chemical soil fertility  Climate scenarios  Forest ecosystem model  Forest management  Harvest residues  Nutrient balances  Nutrient outputs  
Butt rot incidence in the northernmost distribution area of Heterobasidion in Finland 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 425: 154-163
作者:  Muller, Michael M.;  Kaitera, Juha;  Henttonen, Helena M.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Norway spruce  Picea abies  Scots pine  Pinus sylvestris  Forest pathology  Decay  Climate change  Site fertility  
Distribution of Heterobasidion butt rot in northern Finland 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 425: 85-91
作者:  Muller, Michael M.;  Henttonen, Helena M.;  Penttila, Reijo;  Kulju, Matti;  Helo, Teppo;  Kaitera, Juha
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Climate change  Decay  Forest pathology  Norway spruce  Picea abies  Root rot  Site fertility  Soil pH  
Chronic human disturbance affects plant trait distribution in a seasonally dry tropical forest 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2018, 13 (2)
作者:  Sfair, Julia C.;  de Bello, Francesco;  de Franca, Thaysa Q.;  Baldauf, Cristina;  Tabarelli, Marcelo
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Caatinga  intraspecific variability  livestock  rainfall  soil fertility  species turnover  wood extraction