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The arms race between bacteria and their phage foes 期刊论文
NATURE, 2020, 577 (7790) : 327-336
作者:  Hirschey, Matthew
收藏  |  浏览/下载:45/0  |  提交时间:2020/07/03

Bacteria are under immense evolutionary pressure from their viral invaders-bacteriophages. Bacteria have evolved numerous immune mechanisms, both innate and adaptive, to cope with this pressure. The discovery and exploitation of CRISPR-Cas systems have stimulated a resurgence in the identification and characterization of anti-phage mechanisms. Bacteriophages use an extensive battery of counter-defence strategies to co-exist in the presence of these diverse phage defence mechanisms. Understanding the dynamics of the interactions between these microorganisms has implications for phage-based therapies, microbial ecology and evolution, and the development of new biotechnological tools. Here we review the spectrum of anti-phage systems and highlight their evasion by bacteriophages.


  
Clonally expanded CD8 T cells patrol the cerebrospinal fluid in Alzheimer's disease 期刊论文
NATURE, 2020, 577 (7790) : 399-+
作者:  Gate, David;  Saligrama, Naresha;  Leventhal, Olivia;  Yang, Andrew C.;  Unger, Michael S.;  Middeldorp, Jinte;  Chen, Kelly;  Lehallier, Benoit;  Channappa, Divya;  De Los Santos, Mark B.;  McBride, Alisha;  Pluvinage, John;  Elahi, Fanny;  Tam, Grace Kyin-Ye;  Kim, Yongha;  Greicius, Michael;  Wagner, Anthony D.;  Aigner, Ludwig;  Galasko, Douglas R.;  Davis, Mark M.;  Wyss-Coray, Tony
收藏  |  浏览/下载:59/0  |  提交时间:2020/07/03

Alzheimer'  s disease is an incurable neurodegenerative disorder in which neuroinflammation has a critical function(1). However, little is known about the contribution of the adaptive immune response in Alzheimer'  s disease(2). Here, using integrated analyses of multiple cohorts, we identify peripheral and central adaptive immune changes in Alzheimer'  s disease. First, we performed mass cytometry of peripheral blood mononuclear cells and discovered an immune signature of Alzheimer'  s disease that consists of increased numbers of CD8(+) T effector memory CD45RA(+) (T-EMRA) cells. In a second cohort, we found that CD8(+) T-EMRA cells were negatively associated with cognition. Furthermore, single-cell RNA sequencing revealed that T cell receptor (TCR) signalling was enhanced in these cells. Notably, by using several strategies of single-cell TCR sequencing in a third cohort, we discovered clonally expanded CD8(+) T-EMRA cells in the cerebrospinal fluid of patients with Alzheimer'  s disease. Finally, we used machine learning, cloning and peptide screens to demonstrate the specificity of clonally expanded TCRs in the cerebrospinal fluid of patients with Alzheimer'  s disease to two separate Epstein-Barr virus antigens. These results reveal an adaptive immune response in the blood and cerebrospinal fluid in Alzheimer'  s disease and provide evidence of clonal, antigen-experienced T cells patrolling the intrathecal space of brains affected by age-related neurodegeneration.


  
IL-15, gluten and HLA-DQ8 drive tissue destruction in coeliac disease 期刊论文
NATURE, 2020, 578 (7796) : 600-+
作者:  Wang, Haibo;  Dienemann, Christian;  Stuetzer, Alexandra;  Urlaub, Henning;  Cheung, Alan C. M.;  Cramer, Patrick
收藏  |  浏览/下载:47/0  |  提交时间:2020/07/03

An HLA- and gluten-dependent mouse model of coeliac disease with villous atrophy provides evidence for the cooperative role of IL-15 and gluten-specific CD4(+) T cells in licensing the full activation of cytotoxic T cells that are necessary for inducing epithelial damage.


Coeliac disease is a complex, polygenic inflammatory enteropathy caused by exposure to dietary gluten that occurs in a subset of genetically susceptible individuals who express either the HLA-DQ8 or HLA-DQ2 haplotypes(1,2). The need to develop non-dietary treatments is now widely recognized(3), but no pathophysiologically relevant gluten- and HLA-dependent preclinical model exists. Furthermore, although studies in humans have led to major advances in our understanding of the pathogenesis of coeliac disease(4), the respective roles of disease-predisposing HLA molecules, and of adaptive and innate immunity in the development of tissue damage, have not been directly demonstrated. Here we describe a mouse model that reproduces the overexpression of interleukin-15 (IL-15) in the gut epithelium and lamina propria that is characteristic of active coeliac disease, expresses the predisposing HLA-DQ8 molecule, and develops villous atrophy after ingestion of gluten. Overexpression of IL-15 in both the epithelium and the lamina propria is required for the development of villous atrophy, which demonstrates the location-dependent central role of IL-15 in the pathogenesis of coeliac disease. In addition, CD4(+) T cells and HLA-DQ8 have a crucial role in the licensing of cytotoxic T cells to mediate intestinal epithelial cell lysis. We also demonstrate a role for the cytokine interferon-gamma (IFN gamma) and the enzyme transglutaminase 2 (TG2) in tissue destruction. By reflecting the complex interaction between gluten, genetics and IL-15-driven tissue inflammation, this mouse model provides the opportunity to both increase our understanding of coeliac disease, and develop new therapeutic strategies.


  
Ecological change in dynamic environments: Accounting for temporal environmental variability in studies of ocean change biology 期刊论文
GLOBAL CHANGE BIOLOGY, 2020, 26 (1) : 54-67
作者:  Kroeker, Kristy J.;  Bell, Lauren E.;  Donham, Emily M.;  Hoshijima, Umihiko;  Lummis, Sarah;  Toy, Jason A.;  Willis-Norton, Ellen
收藏  |  浏览/下载:25/0  |  提交时间:2020/02/17
adaptive tracking  bioenergetic  behavioral strategies  manipulative experiments  physiological adaptations  variable environments  
Persistence, loss and gain: Characterising mature green roof vegetation by functional composition 期刊论文
LANDSCAPE AND URBAN PLANNING, 2019, 185: 228-236
作者:  Thuring, Christine E.;  Dunnett, Nigel P.
收藏  |  浏览/下载:23/0  |  提交时间:2019/11/26
Extensive green roof  Vegetation dynamics  Long-term perspective  CSR adaptive strategies  Functional composition  Urban ecosystems  
Vulnerability of the global terrestrial ecosystems to climate change 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (9) : 4095-4106
作者:  Li, Delong;  Wu, Shuyao;  Liu, Laibao;  Zhang, Yatong;  Li, Shuangcheng
收藏  |  浏览/下载:29/0  |  提交时间:2019/04/09
adaptive strategies  climate change  ecosystem exposure  ecosystem resilience  ecosystem sensitivity  ecosystem vulnerability  
How Do Capital Asset Interactions Affect Livelihood Sensitivity to Climatic Stresses? Insights From the Northeastern Floodplains of Bangladesh 期刊论文
ECOLOGICAL ECONOMICS, 2018, 150: 165-176
作者:  Rahman, H. M. Tuihedur;  Robinson, Brian E.;  Ford, James D.;  Hickey, Gordon M.
收藏  |  浏览/下载:37/0  |  提交时间:2019/04/09
Asset Combination  Adaptive Capacity  Livelihood Strategies  Thresholds  Innovation