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A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds 期刊论文
NATURE, 2020, 580 (7803) : 409-+
作者:  Al-Shayeb, Basem;  Sachdeva, Rohan;  Chen, Lin-Xing;  Ward, Fred;  Munk, Patrick;  Devoto, Audra;  Castelle, Cindy J.;  Olm, Matthew R.;  Bouma-Gregson, Keith;  Amano, Yuki;  He, Christine;  Meheust, Raphael;  Brooks, Brandon;  Thomas, Alex;  Levy, Adi;  Matheus-Carnevali, Paula;  Sun, Christine;  Goltsman, Daniela S. A.;  Borton, Mikayla A.;  Sharrar, Allison;  Jaffe, Alexander L.;  Nelson, Tara C.;  Kantor, Rose;  Keren, Ray;  Lane, Katherine R.;  Farag, Ibrahim F.;  Lei, Shufei;  Finstad, Kari;  Amundson, Ronald;  Anantharaman, Karthik;  Zhou, Jinglie;  Probst, Alexander J.;  Power, Mary E.;  Tringe, Susannah G.;  Li, Wen-Jun;  Wrighton, Kelly;  Harrison, Sue;  Morowitz, Michael;  Relman, David A.;  Doudna, Jennifer A.;  Lehours, Anne-Catherine;  Warren, Lesley;  Cate, Jamie H. D.;  Santini, Joanne M.;  Banfield, Jillian F.
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

Mycobacterium tuberculosis (Mtb) is an obligate human pathogen and the causative agent of tuberculosis(1-3). Although Mtb can synthesize vitamin B-12 (cobalamin) de novo, uptake of cobalamin has been linked to pathogenesis of tuberculosis2. Mtb does not encode any characterized cobalamin transporter(4-6)  however, the gene rv1819c was found to be essential for uptake of cobalamin(1). This result is difficult to reconcile with the original annotation of Rv1819c as a protein implicated in the transport of antimicrobial peptides such as bleomycin(7). In addition, uptake of cobalamin seems inconsistent with the amino acid sequence, which suggests that Rv1819c has a bacterial ATP-binding cassette (ABC)-exporter fold1. Here, we present structures of Rv1819c, which reveal that the protein indeed contains the ABC-exporter fold, as well as a large water-filled cavity of about 7,700 angstrom(3), which enables the protein to transport the unrelated hydrophilic compounds bleomycin and cobalamin. On the basis of these structures, we propose that Rv1819c is a multi-solute transporter for hydrophilic molecules, analogous to the multidrug exporters of the ABC transporter family, which pump out structurally diverse hydrophobic compounds from cells(8-11).


  
When Do Complex Transport Dynamics Arise in Natural Groundwater Systems? 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (2)
作者:  Wu, J.;  Lester, D. R.;  Trefry, M. G.;  Metcalfe, G.
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/02
Darcy flow  tidal aquifer  poroelastic  solute transport  groundwater  
How Dynamic Boundary Conditions Induce Solute Trapping and Quasi-stagnant Zones in Laboratory Experiments Comprising Unsaturated Heterogeneous Porous Media 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (12) : 10765-10780
作者:  Cremer, C. J. M.;  Neuweiler, I.
收藏  |  浏览/下载:8/0  |  提交时间:2020/02/16
laboratory experiment  unsaturated porous media  conservative solute transport  dynamic boundary conditions  
Pore-Scale Visualization and Quantification of Transient Solute Transport Using Fast Microcomputed Tomography 期刊论文
WATER RESOURCES RESEARCH, 2019
作者:  Van Offenwert, Stefanie;  Cnudde, Veerle;  Bultreys, Tom
收藏  |  浏览/下载:5/0  |  提交时间:2020/02/16
solute transport  pore-scale imaging  fast microcomputed tomography  
Analysis of the Effects of Dam Release Properties and Ambient Groundwater Flow on Surface Water-Groundwater Exchange Over a 100-km-Long Reach 期刊论文
WATER RESOURCES RESEARCH, 2019
作者:  Ferencz, Stephen B.;  Cardenas, M. Bayani;  Neilson, Bethany T.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
hydropeaking  surface water-groundwater interactions  modeling  dams  hyporheic  solute transport  
Effects of Turbulent Hyporheic Mixing on Reach-Scale Transport 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (5) : 3780-3795
作者:  Roche, K. R.;  Li, A.;  Bolster, D.;  Wagner, G. J.;  Packman, A. I.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/26
hyporheic exchange  turbulence  transport  stream  CTRW  solute  
Models of Single-Well Push-Pull Test With Mixing Effect in the Wellbore 期刊论文
WATER RESOURCES RESEARCH, 2018, 54 (12) : 10155-10171
作者:  Wang, Quanrong;  Shi, Wenguang;  Zhan, Hongbin;  Gu, Haochen;  Chen, Kewei
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Radial dispersion  Parameter estimation  Solute transport  Modeling  
Emergent Macrophyte Root Architecture Controls Subsurface Solute Transport 期刊论文
WATER RESOURCES RESEARCH, 2018, 54 (9) : 5958-5972
作者:  Nikolakopoulou, M.;  Argerich, A.;  Drummond, J. D.;  Gacia, E.;  Marti, E.;  Sorolla, A.;  Sabater, F.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
emergent macrophytes  root architecture  solute transport  stream restoration  
Calculating Trajectories Associated With Solute Transport in a Heterogeneous Medium 期刊论文
WATER RESOURCES RESEARCH, 2018, 54 (9) : 6890-6908
作者:  Vasco, D. W.;  Pride, Steven R.;  Zahasky, Christopher;  Benson, Sally M.
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
tracer  transport  streamlines  solute transport  inverse modeling  visualization  
Dynamic hyporheic and riparian flow path geometry through base flow recession in two headwater mountain stream corridors 期刊论文
WATER RESOURCES RESEARCH, 2017, 53 (5)
作者:  Ward, Adam S.;  Schmadel, Noah M.;  Wondzell, Steven M.;  Gooseff, Michael N.;  Singha, Kamini
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
solute transport  solute tracer  riparian  stream corridor  hyporheic  transit time  river corridor