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A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by T-reg cells 期刊论文
NATURE, 2020
作者:  Ma, Xiyu;  Claus, Lucas A. N.;  Leslie, Michelle E.;  Tao, Kai;  Wu, Zhiping;  Liu, Jun;  Yu, Xiao;  Li, Bo;  Zhou, Jinggeng;  Savatin, Daniel V.;  Peng, Junmin;  Tyler, Brett M.;  Heese, Antje;  Russinova, Eugenia;  He, Ping;  Shan, Libo
收藏  |  浏览/下载:39/0  |  提交时间:2020/07/03

Genetic variations underlying susceptibility to complex autoimmune and allergic diseases are concentrated within noncoding regulatory elements termed enhancers(1). The functions of a large majority of disease-associated enhancers are unknown, in part owing to their distance from the genes they regulate, a lack of understanding of the cell types in which they operate, and our inability to recapitulate the biology of immune diseases in vitro. Here, using shared synteny to guide loss-of-function analysis of homologues of human enhancers in mice, we show that the prominent autoimmune and allergic disease risk locus at chromosome 11q13.5(2-7) contains a distal enhancer that is functional in CD4(+) regulatory T (T-reg) cells and required for T-reg-mediated suppression of colitis. The enhancer recruits the transcription factors STAT5 and NF-kappa B to mediate signal-driven expression of Lrrc32, which encodes the protein glycoprotein A repetitions predominant (GARP). Whereas disruption of the Lrrc32 gene results in early lethality, mice lacking the enhancer are viable but lack GARP expression in Foxp3(+) T-reg cells, which are unable to control colitis in a cell-transfer model of the disease. In human T-reg cells, the enhancer forms conformational interactions with the promoter of LRRC32 and enhancer risk variants are associated with reduced histone acetylation and GARP expression. Finally, functional fine-mapping of 11q13.5 using CRISPR-activation (CRISPRa) identifies a CRISPRa-responsive element in the vicinity of risk variant rs11236797 capable of driving GARP expression. These findings provide a mechanistic basis for association of the 11q13.5 risk locus with immune-mediated diseases and identify GARP as a potential target in their therapy.


Shared synteny guides loss-of-function analysis of human enhancer homologues in mice, identifying a distal enhancer at the autoimmune and allergic disease risk locus at chromosome 11q13.5 whose function in regulatory T cells provides a mechanistic basis for its role in disease.


  
C9orf72 suppresses systemic and neural inflammation induced by gut bacteria 期刊论文
NATURE, 2020
作者:  Nikoo, Mohammad Samizadeh;  Jafari, Armin;  Perera, Nirmana;  Zhu, Minghua;  Santoruvo, Giovanni;  Matioli, Elison
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

A hexanucleotide-repeat expansion in C9ORF72 is the most common genetic variant that contributes to amyotrophic lateral sclerosis and frontotemporal dementia(1,2). The C9ORF72 mutation acts through gain- and loss-of-function mechanisms to induce pathways that are implicated in neural degeneration(3-9). The expansion is transcribed into a long repetitive RNA, which negatively sequesters RNA-binding proteins(5) before its non-canonical translation into neural-toxic dipeptide proteins(3,4). The failure of RNA polymerase to read through the mutation also reduces the abundance of the endogenous C9ORF72 gene product, which functions in endolysosomal pathways and suppresses systemic and neural inflammation(6-9). Notably, the effects of the repeat expansion act with incomplete penetrance in families with a high prevalence of amyotrophic lateral sclerosis or frontotemporal dementia, indicating that either genetic or environmental factors modify the risk of disease for each individual. Identifying disease modifiers is of considerable translational interest, as it could suggest strategies to diminish the risk of developing amyotrophic lateral sclerosis or frontotemporal dementia, or to slow progression. Here we report that an environment with reduced abundance of immune-stimulating bacteria(10,11) protects C9orf72-mutant mice from premature mortality and significantly ameliorates their underlying systemic inflammation and autoimmunity. Consistent with C9orf72 functioning to prevent microbiota from inducing a pathological inflammatory response, we found that reducing the microbial burden in mutant mice with broad spectrum antibiotics-as well as transplanting gut microflora from a protective environment-attenuated inflammatory phenotypes, even after their onset. Our studies provide further evidence that the microbial composition of our gut has an important role in brain health and can interact in surprising ways with well-known genetic risk factors for disorders of the nervous system.


Reduced abundance of immune-stimulating gut bacteria ameliorated the inflammatory and autoimmune phenotypes of mice with mutations in C9orf72, which in the human orthologue are linked to amyotrophic lateral sclerosis and frontotemporal dementia.


  
Novel tau filament fold in corticobasal degeneration 期刊论文
NATURE, 2020, 580 (7802) : 283-+
作者:  Izumi, Natsuko;  Shoji, Keisuke;  Suzuki, Yutaka;  Katsuma, Susumu;  Tomari, Yukihide
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

Cyro-electron microscopy of tau filaments from people with corticobasal degeneration reveals a previously unseen four-layered fold, distinct from the filament structures seen in Alzheimer'  s disease, Pick'  s disease and chronic traumatic encephalopathy.


Corticobasal degeneration (CBD) is a neurodegenerative tauopathy-a class of disorders in which the tau protein forms insoluble inclusions in the brain-that is characterized by motor and cognitive disturbances(1-3). The H1 haplotype of MAPT (the tau gene) is present in cases of CBD at a higher frequency than in controls(4,5), and genome-wide association studies have identified additional risk factors(6). By histology, astrocytic plaques are diagnostic of CBD7,8  by SDS-PAGE, so too are detergent-insoluble, 37 kDa fragments of tau(9). Like progressive supranuclear palsy, globular glial tauopathy and argyrophilic grain disease(10), CBD is characterized by abundant filamentous tau inclusions that are made of isoforms with four microtubule-binding repeats(11-15). This distinguishes such '  4R'  tauopathies from Pick'  s disease (the filaments of which are made of three-repeat (3R) tau isoforms) and from Alzheimer'  s disease and chronic traumatic encephalopathy (CTE) (in which both 3R and 4R isoforms are found in the filaments)(16). Here we use cryo-electron microscopy to analyse the structures of tau filaments extracted from the brains of three individuals with CBD. These filaments were identical between cases, but distinct from those seen in Alzheimer'  s disease, Pick'  s disease and CTE17-19. The core of a CBD filament comprises residues lysine 274 to glutamate 380 of tau, spanning the last residue of the R1 repeat, the whole of the R2, R3 and R4 repeats, and 12 amino acids after R4. The core adopts a previously unseen four-layered fold, which encloses a large nonproteinaceous density. This density is surrounded by the side chains of lysine residues 290 and 294 from R2 and lysine 370 from the sequence after R4.


  
Exposure to green areas: Modelling health benefits in a context of study heterogeneity 期刊论文
ECOLOGICAL ECONOMICS, 2020, 167
作者:  Chiabai, Aline;  Quiroga, Sonia;  Martinez-Juarez, Pablo;  Suarez, Cristina;  Garcia de Jalon, Silvestre;  Taylor, Tim
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
Green areas  Health risk reduction  Heckman Selection Model  Contextual factors  Health inequalities  Adaptation  
ATP13A2 deficiency disrupts lysosomal polyamine export 期刊论文
NATURE, 2020, 578 (7795) : 419-+
作者:  Nienhuis, J. H.;  Ashton, A. D.;  Edmonds, D. A.;  Hoitink, A. J. F.;  Kettner, A. J.;  Rowland, J. C.;  Tornqvist, T. E.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

ATP13A2 (PARK9) is a late endolysosomal transporter that is genetically implicated in a spectrum of neurodegenerative disorders, including Kufor-Rakeb syndrome-a parkinsonism with dementia(1)-and early-onset Parkinson'  s disease(2). ATP13A2 offers protection against genetic and environmental risk factors of Parkinson'  s disease, whereas loss of ATP13A2 compromises lysosomes(3). However, the transport function of ATP13A2 in lysosomes remains unclear. Here we establish ATP13A2 as a lysosomal polyamine exporter that shows the highest affinity for spermine among the polyamines examined. Polyamines stimulate the activity of purified ATP13A2, whereas ATP13A2 mutants that are implicated in disease are functionally impaired to a degree that correlates with the disease phenotype. ATP13A2 promotes the cellular uptake of polyamines by endocytosis and transports them into the cytosol, highlighting a role for endolysosomes in the uptake of polyamines into cells. At high concentrations polyamines induce cell toxicity, which is exacerbated by ATP13A2 loss due to lysosomal dysfunction, lysosomal rupture and cathepsin B activation. This phenotype is recapitulated in neurons and nematodes with impaired expression of ATP13A2 or its orthologues. We present defective lysosomal polyamine export as a mechanism for lysosome-dependent cell death that may be implicated in neurodegeneration, and shed light on the molecular identity of the mammalian polyamine transport system.


The lysosomal polyamine transporter ATP13A2 controls the cellular polyamine content, and impaired lysosomal polyamine export represents a lysosome-dependent cell death pathway that may be implicated in ATP13A2-associated neurodegeneration.


  
Human-health probabilistic risk assessment: the role of exposure factors in an urban garden scenario 期刊论文
LANDSCAPE AND URBAN PLANNING, 2019, 185: 191-199
作者:  Barrio-Parra, F.;  Izquierdo-Diaz, M.;  Dominguez-Castillo, A.;  Medina, R.;  De Miguel, E.
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/26
Uncertainty and sensitivity  Free software  Exposure factors  Probabilistic risk assessment  
Rethinking energy security and services in practice: National vulnerability and three energy pathways in Tajikistan 期刊论文
ENERGY POLICY, 2018, 114: 39-50
作者:  Laldjebaev, Murodbek;  Morreale, Stephen J.;  Sovacool, Benjamin K.;  Kassam, Karim-Aly S.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Energy security  Energy services  Vulnerability  Risk factors  Tajikistan  Central Asia  
On the rate of return and risk factors to international oil companies in Iran's buy-back service contracts 期刊论文
ENERGY POLICY, 2017, 103
作者:  Ghandi, Abbas;  Lawell, C. -Y. Cynthia Lin
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Rate of return  Risk factors  Iran'  s buy-back service contract  
Factors promoting and hindering the practice of female genital mutilation/cutting (FGM/C) 科技报告
来源:Center for International Climate and Environmental Research-Oslo (CICERO). 出版年: 2010
作者:  Berg, Rigmor C.;  Denison, Eva Marie-Louise;  Fretheim, Atle
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/05
VDP::Medisinske Fag: 700::Helsefag: 800::Forebyggende medisin: 804  VDP::Medisinske Fag: 700::Klinisk medisinske fag: 750::Gynekologi og obstetrikk: 756  Circumcision, Female  Ceremonial Behavior  Ethics, Medical  Culture  Religion and Medicine  Women's Rights  Legislation  Transients and Migrants  Risk Factors  Health Promotion  
A Novel Framework for Validating and Applying Standardized Small Area Measurement Strategies----Final Report 科技报告
来源:Ecologic Institute (EU). 出版年: 2010
作者:  Dr. Tanja Srebotnjak
收藏  |  浏览/下载:1/0  |  提交时间:2019/04/05
validation  small area measurement  strategies  disease prevalence  risk factors  health outcomes