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Insights into variation in meiosis from 31,228 human sperm genomes 期刊论文
NATURE, 2020, 583 (7815) : 259-+
作者:  Sakai, Akito;  Minami, Susumu;  Koretsune, Takashi;  Chen, Taishi;  Higo, Tomoya;  Wang, Yangming;  Nomoto, Takuya;  Hirayama, Motoaki;  Miwa, Shinji;  Nishio-Hamane, Daisuke;  Ishii, Fumiyuki;  Arita, Ryotaro;  Nakatsuji, Satoru
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/03

Meiosis, although essential for reproduction, is also variable and error-prone: rates of chromosome crossover vary among gametes, between the sexes, and among humans of the same sex, and chromosome missegregation leads to abnormal chromosome numbers (aneuploidy)(1-8). To study diverse meiotic outcomes and how they covary across chromosomes, gametes and humans, we developed Sperm-seq, a way of simultaneously analysing the genomes of thousands of individual sperm. Here we analyse the genomes of 31,228 human gametes from 20 sperm donors, identifying 813,122 crossovers and 787 aneuploid chromosomes. Sperm donors had aneuploidy rates ranging from 0.01 to 0.05 aneuploidies per gamete  crossovers partially protected chromosomes from nondisjunction at the meiosis I cell division. Some chromosomes and donors underwent more-frequent nondisjunction during meiosis I, and others showed more meiosis II segregation failures. Sperm genomes also manifested manygenomic anomalies that could not be explained by simple nondisjunction. Diverse recombination phenotypes-from crossover rates to crossover location and separation, a measure of crossover interference-covaried strongly across individuals and cells. Our results can be incorporated with earlier observations into a unified model in which a core mechanism, the variable physical compaction of meiotic chromosomes, generates interindividual and cell-to-cell variation in diverse meiotic phenotypes.


  
DNA-loop extruding condensin complexes can traverse one another 期刊论文
NATURE, 2020
作者:  Li, Xun;  Zhang, Fei;  He, Haiying;  Berry, Joseph J.;  Zhu, Kai;  Xu, Tao
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

Condensin, a key component of the structure maintenance of chromosome (SMC) protein complexes, has recently been shown to be a motor that extrudes loops of DNA(1). It remains unclear, however, how condensin complexes work together to collectively package DNA into chromosomes. Here we use time-lapse single-molecule visualization to study mutual interactions between two DNA-loop-extruding yeast condensins. We find that these motor proteins, which, individually, extrude DNA in one direction only are able to dynamically change each other'  s DNA loop sizes, even when far apart. When they are in close proximity, condensin complexes are able to traverse each other and form a loop structure, which we term a Z-loop-three double-stranded DNA helices aligned in parallel with one condensin at each edge. Z-loops can fill gaps left by single loops and can form symmetric dimer motors that pull in DNA from both sides. These findings indicate that condensin may achieve chromosomal compaction using a variety of looping structures.


Single-molecule visualization shows that condensin-a motor protein that extrudes DNA in one direction only-can encounter and pass a second condensin molecule to form a new type of DNA loop that gathers DNA from both sides.


  
The Fate of Liquids Trapped During the Earth's Inner Core Growth 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (2)
作者:  Lasbleis, M.;  Kervazo, M.;  Choblet, G.
收藏  |  浏览/下载:2/0  |  提交时间:2020/07/02
core  inner core  supercooling  two-phase flow  compaction  
Effects of skid trails on understory vegetation in forests: A case study from Northern Bavaria (Germany) 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 453
作者:  Mercier, Paula;  Aas, Gregor;  Dengler, Juergen
收藏  |  浏览/下载:9/0  |  提交时间:2020/02/17
Biodiversity  Bryophyte  Ecological indicator value  Forest management  Germany  Logging trail  Skid trail  Soil compaction  Temperate forest  Understory vegetation  Vascular plant  
Mastication of burned non-commercial P. sylvestris L. stands: Effects on soil erosion and vegetation recovery 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 443: 51-58
作者:  Fernandez, Cristina;  Fonturbel, Teresa;  Vega, Jose A.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Wildfire  Mastication  Erosion  Soil compaction  Vegetation diversity  
Impact of compaction on two sensitive forest soils in Lorraine (France) assessed by the changes occurring in the perched water table 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 437: 380-395
作者:  Bonnaud, P.;  Santenoise, Ph.;  Tisserand, D.;  Nourrisson, G.;  Ranger, J.
收藏  |  浏览/下载:2/0  |  提交时间:2019/04/09
Forest soils  Compaction  Restoration  Perched-water-table  
Influence of skidder traffic on soil bulk density, aspen regeneration, and vegetation indices following winter harvesting in the Duck Mountain Provincial Park, SK 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 437: 59-69
作者:  Sealey, Landon L.;  Van Rees, Ken C. J.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Soil bulk density  Unoccupied aerial vehicles  UAV  Trembling aspen  Populus tremuloides  Winter harvesting  Soil compaction  Traffic intensity  Aspen regeneration  Multispectral remote sensing  
Impacts of timber forwarding on physical properties of forest soils in southern Finland 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 405
作者:  Toivio, Jenny;  Helmisaari, Helja-Sisko;  Palviainen, Marjo;  Lindeman, Harri;  Ala-Ilomaki, Jari;  Siren, Matti;  Uusitalo, Joni
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Timber harvesting  Soil damage  Soil compaction  Soil protection  Rut formation  
The Temporal and Spatial Variability of the Confined Aquifer Head and Storage Properties in the San Luis Valley, Colorado Inferred From Multiple InSAR Missions 期刊论文
WATER RESOURCES RESEARCH, 2017, 53 (11)
作者:  Chen, Jingyi;  Knight, Rosemary;  Zebker, Howard A.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
InSAR  confined aquifer  aquifer compaction  hydraulic head  aquifer storage properties  
Vulnerability of boreal indicators (ground-dwelling beetles, understory plants and ectomycorrhizal fungi) to severe forest soil disturbance 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 402
作者:  Kranabetter, J. M.;  Haeussler, S.;  Wood, C.
收藏  |  浏览/下载:2/0  |  提交时间:2019/04/09
Disturbance  Compaction  Whole-tree harvest  Boreal indicators  Hieracium