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Fine root dynamics across pantropical rainforest ecosystems 期刊论文
Global Change Biology, 2021
作者:  Walter Huaraca Huasco;  Terhi Riutta;  ;  cile A. J. Girardin;  Fernando Hancco Pacha;  Beisit L. Puma Vilca;  Sam Moore;  Sami W. Rifai;  Jhon del Aguila-Pasquel;  Alejandro Araujo Murakami;  Renata Freitag;  Alexandra C. Morel;  Sheleme Demissie;  Christopher E. Doughty;  Imma Oliveras;  Darcy F. Galiano Cabrera;  Liliana Durand Baca;  Filio Farfá;  n Amé;  zquita;  Javier E. Silva Espejo;  Antonio C.L. da Costa;  Erick Oblitas Mendoza;  Carlos Alberto Quesada;  Fidele Evouna Ondo;  Josué;  Edzang Ndong;  Kathryn J. Jeffery;  Vianet Mihindou;  Lee J. T. White;  Natacha N'ssi Bengone;  Forzia Ibrahim;  Shalom D. Addo-Danso;  Akwasi Duah-Gyamfi;  Gloria Djaney Djagbletey;  Kennedy Owusu-Afriyie;  Lucy Amissah;  Armel T. Mbou;  Toby R. Marthews;  Daniel B. Metcalfe;  Luiz E. O. Aragã;  o;  Ben H. Marimon-Junior;  Beatriz S. Marimon;  Noreen Majalap;  Stephen Adu-Bredu;  Katharine A. Abernethy;  Miles Silman;  Robert M. Ewers;  Patrick Meir;  Yadvinder Malhi
收藏  |  浏览/下载:18/0  |  提交时间:2021/06/15
Resistance of African tropical forests to an extreme climate anomaly 期刊论文
Proceedings of the National Academy of Sciences, 2021
作者:  Amy C. Bennett;  Greta C. Dargie;  Aida Cuni-Sanchez;  John Tshibamba Mukendi;  Wannes Hubau;  Jacques M. Mukinzi;  Oliver L. Phillips;  Yadvinder Malhi;  Martin J. P. Sullivan;  Declan L. M. Cooper;  Stephen Adu-Bredu;  Kofi Affum-Baffoe;  Christian A. Amani;  Lindsay F. Banin;  Hans Beeckman;  Serge K. Begne;  Yannick E. Bocko;  Pascal Boeckx;  Jan Bogaert;  Terry Brncic;  Eric Chezeaux;  Connie J. Clark;  Armandu K. Daniels;  Thales de Haulleville;  Marie-Noël Djuikouo Kamdem;  Jean-Louis Doucet;  Fidèle Evouna Ondo;  Corneille E. N. Ewango;  Ted R. Feldpausch;  Ernest G. Foli;  Christelle Gonmadje;  Jefferson S. Hall;  Olivier J. Hardy;  David J. Harris;  Suspense A. Ifo;  Kathryn J. Jeffery;  Elizabeth Kearsley;  Miguel Leal;  Aurora Levesley;  Jean-Remy Makana;  Faustin Mbayu Lukasu;  Vincent P. Medjibe;  Vianet Mihindu;  Sam Moore;  Natacha Nssi Begone;  Georgia C. Pickavance;  John R. Poulsen;  Jan Reitsma;  Bonaventure Sonké;  Terry C. H. Sunderland;  Hermann Taedoumg;  Joey Talbot;  Darlington S. Tuagben;  Peter M. Umunay;  Hans Verbeeck;  Jason Vleminckx;  Lee J. T. White;  Hannsjoerg Woell;  John T. Woods;  Lise Zemagho;  Simon L. Lewis
收藏  |  浏览/下载:26/0  |  提交时间:2021/06/07
Asynchronous carbon sink saturation in African and Amazonian tropical forests 期刊论文
NATURE, 2020, 579 (7797) : 80-+
作者:  Wannes Hubau;  Simon L. Lewis;  Oliver L. Phillips;  Kofi Affum-Baffoe;  Hans Beeckman;  Aida Cuní;  -Sanchez;  Armandu K. Daniels;  Corneille E. N. Ewango;  Sophie Fauset;  Jacques M. Mukinzi;  Douglas Sheil;  Bonaventure Sonké;  Martin J. P. Sullivan;  Terry C. H. Sunderland;  Hermann Taedoumg;  Sean C. Thomas;  Lee J. T. White;  Katharine A. Abernethy;  Stephen Adu-Bredu;  Christian A. Amani;  Timothy R. Baker;  Lindsay F. Banin;  Fidè;  le Baya;  Serge K. Begne;  Amy C. Bennett;  Fabrice Benedet;  Robert Bitariho;  Yannick E. Bocko;  Pascal Boeckx;  Patrick Boundja;  Roel J. W. Brienen;  Terry Brncic;  Eric Chezeaux;  George B. Chuyong;  Connie J. Clark;  Murray Collins;  James A. Comiskey;  David A. Coomes;  Greta C. Dargie;  Thales de Haulleville;  Marie Noel Djuikouo Kamdem;  Jean-Louis Doucet;  Adriane Esquivel-Muelbert;  Ted R. Feldpausch;  Alusine Fofanah;  Ernest G. Foli;  Martin Gilpin;  Emanuel Gloor;  Christelle Gonmadje;  Sylvie Gourlet-Fleury;  Jefferson S. Hall;  Alan C. Hamilton;  David J. Harris;  Terese B. Hart;  Mireille B. N. Hockemba;  Annette Hladik;  Suspense A. Ifo;  Kathryn J. Jeffery;  Tommaso Jucker;  Emmanuel Kasongo Yakusu;  Elizabeth Kearsley;  David Kenfack;  Alexander Koch;  Miguel E. Leal;  Aurora Levesley;  Jeremy A. Lindsell;  Janvier Lisingo;  Gabriela Lopez-Gonzalez;  Jon C. Lovett;  Jean-Remy Makana;  Yadvinder Malhi;  Andrew R. Marshall;  Jim Martin;  Emanuel H. Martin;  Faustin M. Mbayu;  Vincent P. Medjibe;  Vianet Mihindou;  Edward T. A. Mitchard;  Sam Moore;  Pantaleo K. T. Munishi;  Natacha Nssi Bengone;  Lucas Ojo;  Fidè;  le Evouna Ondo;  Kelvin S.-H. Peh;  Georgia C. Pickavance;  Axel Dalberg Poulsen;  John R. Poulsen;  Lan Qie;  Jan Reitsma;  Francesco Rovero;  Michael D. Swaine;  Joey Talbot;  James Taplin;  David M. Taylor;  Duncan W. Thomas;  Benjamin Toirambe;  John Tshibamba Mukendi;  Darlington Tuagben;  Peter M. Umunay;  Geertje M. F. van der Heijden;  Hans Verbeeck;  Jason Vleminckx;  Simon Willcock;  Hannsjö;  rg Wö;  ll;  John T. Woods;  Lise Zemagho
收藏  |  浏览/下载:23/0  |  提交时间:2020/05/13

Structurally intact tropical forests sequestered about half of the global terrestrial carbon uptake over the 1990s and early 2000s, removing about 15 per cent of anthropogenic carbon dioxide emissions(1-3). Climate-driven vegetation models typically predict that this tropical forest '  carbon sink'  will continue for decades(4,5). Here we assess trends in the carbon sink using 244 structurally intact African tropical forests spanning 11 countries, compare them with 321 published plots from Amazonia and investigate the underlying drivers of the trends. The carbon sink in live aboveground biomass in intact African tropical forests has been stable for the three decades to 2015, at 0.66 tonnes of carbon per hectare per year (95 per cent confidence interval 0.53-0.79), in contrast to the long-term decline in Amazonian forests(6). Therefore the carbon sink responses of Earth'  s two largest expanses of tropical forest have diverged. The difference is largely driven by carbon losses from tree mortality, with no detectable multi-decadal trend in Africa and a long-term increase in Amazonia. Both continents show increasing tree growth, consistent with the expected net effect of rising atmospheric carbon dioxide and air temperature(7-9). Despite the past stability of the African carbon sink, our most intensively monitored plots suggest a post-2010 increase in carbon losses, delayed compared to Amazonia, indicating asynchronous carbon sink saturation on the two continents. A statistical model including carbon dioxide, temperature, drought and forest dynamics accounts for the observed trends and indicates a long-term future decline in the African sink, whereas the Amazonian sink continues to weaken rapidly. Overall, the uptake of carbon into Earth'  s intact tropical forests peaked in the 1990s. Given that the global terrestrial carbon sink is increasing in size, independent observations indicating greater recent carbon uptake into the Northern Hemisphere landmass(10) reinforce our conclusion that the intact tropical forest carbon sink has already peaked. This saturation and ongoing decline of the tropical forest carbon sink has consequences for policies intended to stabilize Earth'  s climate.


  
An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity 期刊论文
NATURE, 2020, 577 (7791) : 572-+
作者:  Athukoralage, Januka S.;  McMahon, Stephen A.;  Zhang, Changyi;  Grueschow, Sabine;  Graham, Shirley;  Krupovic, Mart;  Whitaker, Rachel J.;  Gloster, Tracey M.;  White, Malcolm F.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

The CRISPR system in bacteria and archaea provides adaptive immunity against mobile genetic elements. Type III CRISPR systems detect viral RNA, resulting in the activation of two regions of the Cas10 protein: an HD nuclease domain (which degrades viral DNA)(1,2) and a cyclase domain (which synthesizes cyclic oligoadenylates from ATP)(3-5). Cyclic oligoadenylates in turn activate defence enzymes with a CRISPR-associated Rossmann fold domain(6), sculpting a powerful antiviral response(7-10) that can drive viruses to extinction(7,8). Cyclic nucleotides are increasingly implicated in host-pathogen interactions(11-13). Here we identify a new family of viral anti-CRISPR (Acr) enzymes that rapidly degrade cyclic tetra-adenylate (cA(4)). The viral ring nuclease AcrIII-1 is widely distributed in archaeal and bacterial viruses and in proviruses. The enzyme uses a previously unknown fold to bind cA(4) specifically, and a conserved active site to rapidly cleave this signalling molecule, allowing viruses to neutralize the type III CRISPR defence system. The AcrIII-1 family has a broad host range, as it targets cA(4) signalling molecules rather than specific CRISPR effector proteins. Our findings highlight the crucial role of cyclic nucleotide signalling in the conflict between viruses and their hosts.


Bacteria and archaea use cyclic oligoadenylate molecules as part of the CRISPR system for antiviral defence  here, a family of viral enzymes that rapidly degrades cyclic oligoadenylates is identified and biochemically and structurally described.


  
AQP5 enriches for stem cells and cancer origins in the distal stomach 期刊论文
NATURE, 2020, 578 (7795) : 437-+
作者:  Athukoralage, Januka S.;  McMahon, Stephen A.;  Zhang, Changyi;  Grueschow, Sabine;  Graham, Shirley;  Krupovic, Mart;  Whitaker, Rachel J.;  Gloster, Tracey M.;  White, Malcolm F.
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

LGR5 marks resident adult epithelial stem cells at the gland base in the mouse pyloric stomach(1), but the identity of the equivalent human stem cell population remains unknown owing to a lack of surface markers that facilitate its prospective isolation and validation. In mouse models of intestinal cancer, LGR5(+) intestinal stem cells are major sources of cancer following hyperactivation of the WNT pathway(2). However, the contribution of pyloric LGR5(+) stem cells to gastric cancer following dysregulation of the WNT pathway-a frequent event in gastric cancer in humans(3)-is unknown. Here we use comparative profiling of LGR5(+) stem cell populations along the mouse gastrointestinal tract to identify, and then functionally validate, the membrane protein AQP5 as a marker that enriches for mouse and human adult pyloric stem cells. We show that stem cells within the AQP5(+) compartment are a source of WNT-driven, invasive gastric cancer in vivo, using newly generated Aqp5-creERT2 mouse models. Additionally, tumour-resident AQP5(+) cells can selectively initiate organoid growth in vitro, which indicates that this population contains potential cancer stem cells. In humans, AQP5 is frequently expressed in primary intestinal and diffuse subtypes of gastric cancer (and in metastases of these subtypes), and often displays altered cellular localization compared with healthy tissue. These newly identified markers and mouse models will be an invaluable resource for deciphering the early formation of gastric cancer, and for isolating and characterizing human-stomach stem cells as a prerequisite for harnessing the regenerative-medicine potential of these cells in the clinic.


AQP5 is identified as a marker for pyloric stem cells in humans and mice, and stem cells in the AQP5(+) compartment are shown to be a source of invasive gastric cancer in mouse models.


  
Exploring temporality in socio-ecological resilience through experiences of the 2015-16 El Nino across the Tropics 期刊论文
GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS, 2019, 55: 1-14
作者:  Whitfield, Stephen;  Beauchamp, Emilie;  Boyd, Doreen S.;  Burslem, David;  Byg, Anja;  Colledge, Francis;  Cutler, Mark E. J.;  Didena, Mengistu;  Dougill, Andrew;  Foody, Giles;  Godbold, Jasmin A.;  Hazenbosch, Mirjam;  Hirons, Mark;  Speranz, Chinwe Ifejika;  Jew, Eleanor;  Lacambra, Carmen;  Mkwambisi, David;  Moges, Awdenegest;  Morel, Alexandra;  Morris, Rebecca;  Novo, Paula;  Rueda, Mario;  Smith, Harriet;  Solan, Martin;  Spencer, Thomas;  Thornton, Ann;  Touza, Julia;  White, Piran C. L.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/26
Climate change  Variability  Temporal dynamics  Resistance  Perturbations  Societies  Ecosystems  
Meteorological and chemical impacts on ozone formation: A case study in Hangzhou, China 期刊论文
ATMOSPHERIC RESEARCH, 2017, 196
作者:  Li, Kangwei;  Chen, Linghong;  Ying, Fang;  White, Stephen J.;  Jang, Carey;  Wu, Xuecheng;  Gao, Xiang;  Hong, Shengmao;  Shen, Jiandong;  Azzi, Merched;  Cen, Kefa
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Urban ozone  Meteorological effect  SPM  O-3-VOCs-NOx  RIR  
Effect of nitrogen oxides (NO and NO2) and toluene on SO2 photooxidation, nucleation and growth: A smog chamber study 期刊论文
ATMOSPHERIC RESEARCH, 2017, 192
作者:  Li, Kangwei;  Chen, Linghong;  White, Stephen J.;  Han, Ke;  Lv, Biao;  Bao, Kaiji;  Wu, Xuecheng;  Gao, Xiang;  Azzi, Merched;  Cen, Kefa
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Smog chamber  New particle formation  Complex air pollution  Effective density  PM2.5