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Materials challenges and opportunities for quantum computing hardware 期刊论文
Science, 2021
作者:  Nathalie P. de Leon;  Kohei M. Itoh;  Dohun Kim;  Karan K. Mehta;  Tracy E. Northup;  Hanhee Paik;  B. S. Palmer;  N. Samarth;  Sorawis Sangtawesin;  D. W. Steuerman
收藏  |  浏览/下载:10/0  |  提交时间:2021/04/20
Risk of Bias Assessments and Evidence Syntheses for Observational Epidemiologic Studies of Environmental and Occupational Exposures: Strengths and Limitations 期刊论文
Environmental Health Perspectives, 2020
作者:  Kyle Steenland;  M.K. Schubauer-Berigan;  R. Vermeulen;  R.M. Lunn;  K. Straif;  S. Zahm;  P. Stewart;  W.D. Arroyave;  S.S. Mehta;  N. Pearce
收藏  |  浏览/下载:5/0  |  提交时间:2020/09/22
Risk of Bias Assessments and Evidence Syntheses for Observational Epidemiologic Studies of Environmental and Occupational Exposures: Strengths and Limitations 期刊论文
Environmental Health Perspectives, 2020
作者:  Kyle Steenland;  M.K. Schubauer-Berigan;  R. Vermeulen;  R.M. Lunn;  K. Straif;  S. Zahm;  P. Stewart;  W.D. Arroyave;  S.S. Mehta;  N. Pearce
收藏  |  浏览/下载:6/0  |  提交时间:2020/09/22
Origin of complexity in haemoglobin evolution 期刊论文
NATURE, 2020
作者:  Cheema, Suraj S.;  Kwon, Daewoong;  Shanker, Nirmaan;  dos Reis, Roberto;  Hsu, Shang-Lin;  Xiao, Jun;  Zhang, Haigang;  Wagner, Ryan;  Datar, Adhiraj;  McCarter, Margaret R.;  Serrao, Claudy R.;  Yadav, Ajay K.;  Karbasian, Golnaz;  Hsu, Cheng-Hsiang;  Tan, Ava J.;  Wang, Li-Chen;  Thakare, Vishal;  Zhang, Xiang;  Mehta, Apurva;  Karapetrova, Evguenia;  Chopdekar, Rajesh, V;  Shafer, Padraic;  Arenholz, Elke;  Hu, Chenming;  Proksch, Roger;  Ramesh, Ramamoorthy;  Ciston, Jim;  Salahuddin, Sayeef
收藏  |  浏览/下载:50/0  |  提交时间:2020/07/03

Most proteins associate into multimeric complexes with specific architectures(1,2), which often have functional properties such as cooperative ligand binding or allosteric regulation(3). No detailed knowledge is available about how any multimer and its functions arose during evolution. Here we use ancestral protein reconstruction and biophysical assays to elucidate the origins of vertebrate haemoglobin, a heterotetramer of paralogous alpha- and beta-subunits that mediates respiratory oxygen transport and exchange by cooperatively binding oxygen with moderate affinity. We show that modern haemoglobin evolved from an ancient monomer and characterize the historical '  missing link'  through which the modern tetramer evolved-a noncooperative homodimer with high oxygen affinity that existed before the gene duplication that generated distinct alpha- and beta-subunits. Reintroducing just two post-duplication historical substitutions into the ancestral protein is sufficient to cause strong tetramerization by creating favourable contacts with more ancient residues on the opposing subunit. These surface substitutions markedly reduce oxygen affinity and even confer cooperativity, because an ancient linkage between the oxygen binding site and the multimerization interface was already an intrinsic feature of the protein'  s structure. Our findings establish that evolution can produce new complex molecular structures and functions via simple genetic mechanisms that recruit existing biophysical features into higher-level architectures.


Experimental analysis of reconstructed ancestral globins reveals that haemoglobin'  s complex tetrameric structure and oxygen-binding functions evolved by simple genetic and biophysical mechanisms.


  
Epigenetic therapy inhibits metastases by disrupting premetastatic niches 期刊论文
NATURE, 2020, 579 (7798) : 284-+
作者:  Mehta, Vedanta;  Pang, Kar-Lai;  Rozbesky, Daniel;  Nather, Katrin;  Keen, Adam;  Lachowski, Dariusz;  Kong, Youxin;  Karia, Dimple;  Ameismeier, Michael;  Huang, Jianhua;  Fang, Yun;  del Rio Hernandez, Armando;  Reader, John S.;  Jones, E. Yvonne;  Tzima, Ellie
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/03

Cancer recurrence after surgery remains an unresolved clinical problem(1-3). Myeloid cells derived from bone marrow contribute to the formation of the premetastatic microenvironment, which is required for disseminating tumour cells to engraft distant sites(4-6). There are currently no effective interventions that prevent the formation of the premetastatic microenvironment(6,7). Here we show that, after surgical removal of primary lung, breast and oesophageal cancers, low-dose adjuvant epigenetic therapy disrupts the premetastatic microenvironment and inhibits both the formation and growth of lung metastases through its selective effect on myeloid-derived suppressor cells (MDSCs). In mouse models of pulmonary metastases, MDSCs are key factors in the formation of the premetastatic microenvironment after resection of primary tumours. Adjuvant epigenetic therapy that uses low-dose DNA methyltransferase and histone deacetylase inhibitors, 5-azacytidine and entinostat, disrupts the premetastatic niche by inhibiting the trafficking of MDSCs through the downregulation of CCR2 and CXCR2, and by promoting MDSC differentiation into a more-interstitial macrophage-like phenotype. A decreased accumulation of MDSCs in the premetastatic lung produces longer periods of disease-free survival and increased overall survival, compared with chemotherapy. Our data demonstrate that, even after removal of the primary tumour, MDSCs contribute to the development of premetastatic niches and settlement of residual tumour cells. A combination of low-dose adjuvant epigenetic modifiers that disrupts this premetastatic microenvironment and inhibits metastases may permit an adjuvant approach to cancer therapy.


  
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.


  
A Laboratory Investigation of Spume Generation in High Winds for Fresh and Seawater 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2019, 124 (21) : 11297-11312
作者:  Mehta, S.;  Ortiz-Suslow, D. G.;  Smith, A. W.;  Haus, B. K.
收藏  |  浏览/下载:6/0  |  提交时间:2020/02/17
sea spray production  high winds  laboratory experiments  air-sea interaction  particle image velocimetry  freshwater versus seawater  
Quantifying the contribution of recessive coding variation to developmental disorders 期刊论文
SCIENCE, 2018, 362 (6419) : 1161-+
作者:  Martin, Hilary C.;  Jones, Wendy D.;  McIntyre, Rebecca;  Sanchez-Andrade, Gabriela;  Sanderson, Mark;  Stephenson, James D.;  Jones, Carla P.;  Handsaker, Juliet;  Gallone, Giuseppe;  Bruntraeger, Michaela;  McRae, Jeremy F.;  Prigmore, Elena;  Short, Patrick;  Niemi, Mari;  Kaplanis, Joanna;  Radford, Elizabeth J.;  Akavvi, Nadia;  Balasubramanian, Meena;  Dean, John;  Horton, Rachel;  Hulbert, Alice;  Johnson, Diana S.;  Johnson, Katie;  Kumar, Dhavendra;  Lynch, Sally Ann;  Mehta, Sarju G.;  Morton, Jenny;  Parker, Michael J.;  Splitt, Miranda;  Turnpenny, Peter D.;  Vasudevan, Pradeep C.;  Wright, Michael;  Bassett, Andrew;  Gerety, Sebastian S.;  Wright, Caroline F.;  FitzPatrick, David R.;  Firth, Helen, V;  Hurles, Matthew E.;  Barrett, Jeffrey C.
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Software Tools to Facilitate Systematic Review Used for Cancer Hazard Identification 期刊论文
ENVIRONMENTAL HEALTH PERSPECTIVES, 2018, 126 (10)
作者:  Shapiro, Andrew J.;  Antoni, Sebastien;  Guyton, Kathryn Z.;  Lunn, Ruth M.;  Loomis, Dana;  Rusyn, Ivan;  Jahnke, Gloria D.;  Schwingl, Pamela J.;  Mehta, Suril S.;  Addington, Josh;  Guha, Neela
收藏  |  浏览/下载:3/0  |  提交时间:2019/04/09
Translocation of a gut pathobiont drives autoimmunity in mice and humans (vol 359, pg 1156, 2018) 期刊论文
SCIENCE, 2018, 360 (6388)
作者:  Vieira, S. Manfredo;  Hiltensperger, M.;  Kumar, V.;  Zegarra-Ruiz, D.;  Dehner, C.;  Khan, N.;  Costa, F. R. C.;  Tiniakou, E.;  Greiling, T.;  Ruff, W.;  Barbieri, A.;  Kriegel, C.;  Mehta, S. S.;  Knight, J. R.;  Jain, D.;  Goodman, A. L.;  Kriegel, M. A.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27