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Haplotype-resolved diverse human genomes and integrated analysis of structural variation 期刊论文
Science, 2021
作者:  Peter Ebert;  Peter A. Audano;  Qihui Zhu;  Bernardo Rodriguez-Martin;  David Porubsky;  Marc Jan Bonder;  Arvis Sulovari;  Jana Ebler;  Weichen Zhou;  Rebecca Serra Mari;  Feyza Yilmaz;  Xuefang Zhao;  PingHsun Hsieh;  Joyce Lee;  Sushant Kumar;  Jiadong Lin;  Tobias Rausch;  Yu Chen;  Jingwen Ren;  Martin Santamarina;  Wolfram Höps;  Hufsah Ashraf;  Nelson T. Chuang;  Xiaofei Yang;  Katherine M. Munson;  Alexandra P. Lewis;  Susan Fairley;  Luke J. Tallon;  Wayne E. Clarke;  Anna O. Basile;  Marta Byrska-Bishop;  André Corvelo;  Uday S. Evani;  Tsung-Yu Lu;  Mark J. P. Chaisson;  Junjie Chen;  Chong Li;  Harrison Brand;  Aaron M. Wenger;  Maryam Ghareghani;  William T. Harvey;  Benjamin Raeder;  Patrick Hasenfeld;  Allison A. Regier;  Haley J. Abel;  Ira M. Hall;  Paul Flicek;  Oliver Stegle;  Mark B. Gerstein;  Jose M. C. Tubio;  Zepeng Mu;  Yang I. Li;  Xinghua Shi;  Alex R. Hastie;  Kai Ye;  Zechen Chong;  Ashley D. Sanders;  Michael C. Zody;  Michael E. Talkowski;  Ryan E. Mills;  Scott E. Devine;  Charles Lee;  Jan O. Korbel;  Tobias Marschall;  Evan E. Eichler
收藏  |  浏览/下载:24/0  |  提交时间:2021/04/06
Quantifying and addressing the prevalence and bias of study designs in the environmental and social sciences 期刊论文
Nature Communications, 2020
作者:  Alec P. Christie;  David Abecasis;  Mehdi Adjeroud;  Juan C. Alonso;  Tatsuya Amano;  Alvaro Anton;  Barry P. Baldigo;  Rafael Barrientos;  Jake E. Bicknell;  Deborah A. Buhl;  Just Cebrian;  Ricardo S. Ceia;  Luciana Cibils-Martina;  Sarah Clarke;  Joachim Claudet;  Michael D. Craig;  Dominique Davoult;  Annelies De Backer;  Mary K. Donovan;  Tyler D. Eddy;  Filipe M. Franç;  a;  Jonathan P. A. Gardner;  Bradley P. Harris;  Ari Huusko;  Ian L. Jones;  Brendan P. Kelaher;  Janne S. Kotiaho;  Adrià;  ;  pez-Baucells;  Heather L. Major;  Aki Mä;  ki-Petä;  ys;  Beatriz Martí;  n;  Carlos A. Martí;  n;  Philip A. Martin;  Daniel Mateos-Molina;  Robert A. McConnaughey;  Michele Meroni;  Christoph F. J. Meyer;  Kade Mills;  Monica Montefalcone;  Norbertas Noreika;  Carlos Palací;  n;  Anjali Pande;  C. Roland Pitcher;  Carlos Ponce;  Matt Rinella;  Ricardo Rocha;  Marí;  a C. Ruiz-Delgado;  Juan J. Schmitter-Soto;  Jill A. Shaffer;  Shailesh Sharma;  Anna A. Sher;  Doriane Stagnol;  Thomas R. Stanley;  Kevin D. E. Stokesbury;  Aurora Torres;  Oliver Tully;  Teppo Vehanen;  Corinne Watts;  Qingyuan Zhao;  William J. Sutherland
收藏  |  浏览/下载:15/0  |  提交时间:2020/12/22
Fire and biodiversity in the Anthropocene 期刊论文
Science, 2020
作者:  Luke T. Kelly;  Katherine M. Giljohann;  Andrea Duane;  Núria Aquilué;  Sally Archibald;  Enric Batllori;  Andrew F. Bennett;  Stephen T. Buckland;  Quim Canelles;  Michael F. Clarke;  Marie-Josée Fortin;  Virgilio Hermoso;  Sergi Herrando;  Robert E. Keane;  Frank K. Lake;  Michael A. McCarthy;  Alejandra Morán-Ordóñez;  Catherine L. Parr;  Juli G. Pausas;  Trent D. Penman;  Adrián Regos;  Libby Rumpff;  Julianna L. Santos;  Annabel L. Smith;  Alexandra D. Syphard;  Morgan W. Tingley;  Lluís Brotons
收藏  |  浏览/下载:8/0  |  提交时间:2020/11/24
Fusing subnational with national climate action is central to decarbonization: the case of the United States 期刊论文
Nature Communications, 2020
作者:  Nathan E. Hultman;  Leon Clarke;  Carla Frisch;  Kevin Kennedy;  Haewon McJeon;  Tom Cyrs;  Pete Hansel;  Paul Bodnar;  Michelle Manion;  Morgan R. Edwards;  Ryna Cui;  Christina Bowman;  Jessie Lund;  Michael I. Westphal;  Andrew Clapper;  Joel Jaeger;  Arijit Sen;  Jiehong Lou;  Devashree Saha;  Wendy Jaglom;  Koben Calhoun;  Kristin Igusky;  James deWeese;  Kareem Hammoud;  J. C. Altimirano;  Margaret Dennis;  Chris Henderson;  Gill Zwicker;  John O’;  Neill
收藏  |  浏览/下载:10/0  |  提交时间:2020/10/20
NIMBY, YIMBY, or something else? Geographies of public perceptions of shale gas development in the Marcellus Shale 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2020, 15 (7)
作者:  Zanocco, Chad;  Boudet, Hilary;  Clarke, Christopher E.;  Stedman, Richard;  Evensen, Darrick
收藏  |  浏览/下载:10/0  |  提交时间:2020/08/18
hydraulic fracturing  Marcellus Shale  political ideology  proximity  public opinion  
An assessment of community-based adaptation initiatives in the Pacific Islands 期刊论文
NATURE CLIMATE CHANGE, 2020, 10 (7) : 628-+
作者:  McNamara, Karen E.;  Clissold, Rachel;  Westoby, Ross;  Piggott-McKellar, Annah E.;  Kumar, Roselyn;  Clarke, Tahlia;  Namoumou, Frances;  Areki, Francis;  Joseph, Eugene;  Warrick, Olivia;  Nunn, Patrick D.
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/06
Rapidly-migrating and internally-generated knickpoints can control submarine channel evolution 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Heijnen, Maarten S.;  Clare, Michael A.;  Cartigny, Matthieu J. B.;  Talling, Peter J.;  Hage, Sophie;  Lintern, D. Gwyn;  Stacey, Cooper;  Parsons, Daniel R.;  Simmons, Stephen M.;  Chen, Ye;  Sumner, Esther J.;  Dix, Justin K.;  Clarke, John E. Hughes
收藏  |  浏览/下载:13/0  |  提交时间:2020/06/22
Human settlement of East Polynesia earlier, incremental, and coincident with prolonged South Pacific drought 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (16) : 8813-8819
作者:  Sear, David A.;  Allen, Melinda S.;  Hassall, Jonathan D.;  Maloney, Ashley E.;  Langdon, Peter G.;  Morrison, Alex E.;  Henderson, Andrew C. G.;  Mackay, Helen;  Croudace, Ian W.;  Clarke, Charlotte;  Sachs, Julian P.;  Macdonald, Georgiana;  Chiverrell, Richard C.;  Leng, Melanie J.;  Cisneros-Dozal, L. M.;  Fonville, Thierry
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/13
Polynesian voyaging  East Polynesian colonization  biomarkers  drought  palaeoclimate  
Two conserved epigenetic regulators prevent healthy ageing 期刊论文
NATURE, 2020
作者:  Yoshida, Kenichi;  Gowers, Kate H. C.;  Lee-Six, Henry;  Chandrasekharan, Deepak P.;  Coorens, Tim;  Maughan, Elizabeth F.;  Beal, Kathryn;  Menzies, Andrew;  Millar, Fraser R.;  Anderson, Elizabeth;  Clarke, Sarah E.;  Pennycuick, Adam;  Thakrar, Ricky M.;  Butler, Colin R.;  Kakiuchi, Nobuyuki;  Hirano, Tomonori;  Hynds, Robert E.;  Stratton, Michael R.;  Martincorena, Inigo;  Janes, Sam M.;  Campbell, Peter J.
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

It has long been assumed that lifespan and healthspan correlate strongly, yet the two can be clearly dissociated(1-6). Although there has been a global increase in human life expectancy, increasing longevity is rarely accompanied by an extended healthspan(4,7). Thus, understanding the origin of healthy behaviours in old people remains an important and challenging task. Here we report a conserved epigenetic mechanism underlying healthy ageing. Through genome-wide RNA-interference-based screening of genes that regulate behavioural deterioration in ageing Caenorhabditis elegans, we identify 59 genes as potential modulators of the rate of age-related behavioural deterioration. Among these modulators, we found that a neuronal epigenetic reader, BAZ-2, and a neuronal histone 3 lysine 9 methyltransferase, SET-6, accelerate behavioural deterioration in C. elegans by reducing mitochondrial function, repressing the expression of nuclear-encoded mitochondrial proteins. This mechanism is conserved in cultured mouse neurons and human cells. Examination of human databases(8,9) shows that expression of the human orthologues of these C. elegans regulators, BAZ2B and EHMT1, in the frontal cortex increases with age and correlates positively with the progression of Alzheimer'  s disease. Furthermore, ablation of Baz2b, the mouse orthologue of BAZ-2, attenuates age-dependent body-weight gain and prevents cognitive decline in ageing mice. Thus our genome-wide RNA-interference screen in C. elegans has unravelled conserved epigenetic negative regulators of ageing, suggesting possible ways to achieve healthy ageing.


Two epigenetic regulators-identified in an RNA interference screen in Caenhorhabditis elegans, and conserved in mammals-diminish mitochondrial function and accelerate the age-related deterioration of behaviour.


  
High-pressure strengthening in ultrafine-grained metals 期刊论文
NATURE, 2020
作者:  Yoshida, Kenichi;  Gowers, Kate H. C.;  Lee-Six, Henry;  Chandrasekharan, Deepak P.;  Coorens, Tim;  Maughan, Elizabeth F.;  Beal, Kathryn;  Menzies, Andrew;  Millar, Fraser R.;  Anderson, Elizabeth;  Clarke, Sarah E.;  Pennycuick, Adam;  Thakrar, Ricky M.;  Butler, Colin R.
收藏  |  浏览/下载:27/0  |  提交时间:2020/07/03

High-pressure diamond anvil cell experiments reveal that compression strengthening of nanocrystalline nickel increases as its grain sizes decrease to 3 nanometres, owing to dislocation hardening and suppression of grain boundary plasticity.


The Hall-Petch relationship, according to which the strength of a metal increases as the grain size decreases, has been reported to break down at a critical grain size of around 10 to 15 nanometres(1,2). As the grain size decreases beyond this point, the dominant mechanism of deformation switches from a dislocation-mediated process to grain boundary sliding, leading to material softening. In one previous approach, stabilization of grain boundaries through relaxation and molybdenum segregation was used to prevent this softening effect in nickel-molybdenum alloys with grain sizes below 10 nanometres(3). Here we track in situ the yield stress and deformation texturing of pure nickel samples of various average grain sizes using a diamond anvil cell coupled with radial X-ray diffraction. Our high-pressure experiments reveal continuous strengthening in samples with grain sizes from 200 nanometres down to 3 nanometres, with the strengthening enhanced (rather than reduced) at grain sizes smaller than 20 nanometres. We achieve a yield strength of approximately 4.2 gigapascals in our 3-nanometre-grain-size samples, ten times stronger than that of a commercial nickel material. A maximum flow stress of 10.2 gigapascals is obtained in nickel of grain size 3 nanometres for the pressure range studied here. We see similar patterns of compression strengthening in gold and palladium samples down to the smallest grain sizes. Simulations and transmission electron microscopy reveal that the high strength observed in nickel of grain size 3 nanometres is caused by the superposition of strengthening mechanisms: both partial and full dislocation hardening plus suppression of grain boundary plasticity. These insights contribute to the ongoing search for ultrastrong metals via materials engineering.