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Abiotic hydrogen (H-2) sources and sinks near the Mid-Ocean Ridge (MOR) with implications for the subseafloor biosphere 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (24) : 13283-13293
作者:  Worman, Stacey L.;  Pratson, Lincoln F.;  Karson, Jeffrey A.;  Schlesinger, William H.
收藏  |  浏览/下载:12/0  |  提交时间:2020/06/09
biogeochemistry  origins of life  hydrogen  Mid-Ocean Ridge  microbes  
A metabolic pathway for bile acid dehydroxylation by the gut microbiome 期刊论文
NATURE, 2020
作者:  Zhong, Miao;  Tran, Kevin;  Min, Yimeng;  Wang, Chuanhao;  Wang, Ziyun;  Dinh, Cao-Thang;  De Luna, Phil;  Yu, Zongqian;  Rasouli, Armin Sedighian;  Brodersen, Peter;  Sun, Song;  Voznyy, Oleksandr;  Tan, Chih-Shan;  Askerka, Mikhail;  Che, Fanglin;  Liu, Min;  Seifitokaldani, Ali;  Pang, Yuanjie;  Lo, Shen-Chuan;  Ip, Alexander;  Ulissi, Zachary;  Sargent, Edward H.
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice-an important proof-of-principle for the engineering of gut microbial pathways.


The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 mu M and are known to block the growth ofClostridium difficile(1), promote hepatocellular carcinoma(2)and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.(3)). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids(4)  the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A-B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe-S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway intoClostridium sporogenes, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.


  
Gut microbes tune inflammation and lifespan in a mouse model of amyotrophic lateral sclerosis 期刊论文
NATURE, 2020, 582 (7810) : 34-35
作者:  Mega, Emiliano Rodriguez
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

The microbiota modulates amyotrophic lateral sclerosis in an animal model.


There is growing evidence that gut microbes can influence disease. Analysis of a mouse model of the neurodegenerative condition amyotrophic lateral sclerosis offers insight into how gut bacteria might contribute to this illness.


  
Microbial evolutionary strategies in a dynamic ocean 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (11) : 5943-5948
作者:  Walworth, Nathan G.;  Zakem, Emily J.;  Dunne, John P.;  Collins, Sinead;  Levine, Naomi M.
收藏  |  浏览/下载:10/0  |  提交时间:2020/05/13
evolution  marine microbes  fluctuating environment  adaptation timescales  advection  
Nitrate addition stimulates microbial decomposition of organic matter in salt marsh sediments 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (10) : 3224-3241
作者:  Bulseco, Ashley N.;  Giblin, Anne E.;  Tucker, Jane;  Murphy, Anna E.;  Sanderman, Jonathan;  Hiller-Bittrolff, Kenly;  Bowen, Jennifer L.
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
16S rRNA gene  anaerobic respiration  decomposition  flow-through reactor  microbes  nitrate  organic matter  salt marsh  
Global soil acidification impacts on belowground processes 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2019, 14 (7)
作者:  Meng, Cheng;  Tian, Dashuan;  Zeng, Hui;  Li, Zhaolei;  Yi, Chuixiang;  Niu, Shuli
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
acid deposition  soil cations  meta-analysis  soil pH  soil respiration  microbes  
Trends in soil microbial communities in afforestation ecosystem modulated by aggradation phase 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 441: 167-175
作者:  Zhao, F. Z.;  Ren, C. J.;  Han, X. H.;  Yang, G. H.;  Wang, J.;  Doughty, R.;  Wang, Z. T.
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/26
Soil microbes, afforestation  Ecological theory  Aridity index  Meta-analysis  
Nutrient optimization of tree growth alters structure and function of boreal soil food webs 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2018, 428: 46-56
作者:  Maaroufi, Nadia, I;  Palmqvist, Kristin;  Bach, Lisbet H.;  Bokhorst, Stef;  Liess, Antonia;  Gundale, Michael J.;  Kardol, Paul;  Nordin, Annika;  Meunier, Cedric L.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Nematode  Mesofauna  Microbes  Boreal forest  Ecological stoichiometry  Leaf litter quality  Nutrient ratios  
Forest die-off following global-change-type drought alters rhizosphere fungal communities 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2018, 13 (9)
作者:  Hopkins, Anna J. M.;  Ruthrof, Katinka X.;  Fontaine, Joseph B.;  Matusick, George;  Dundas, Shannon J.;  Hardy, Giles E. St J.
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
drought  dieback  collapse  soil microbes  ectomycorrhiza  arbuscular mycorrhiza  plant-soil feedbacks  
Shifts in priming partly explain impacts of long-term nitrogen input in different chemical forms on soil organic carbon storage 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (9) : 4160-4172
作者:  Song, Minghua;  Guo, Yu;  Yu, Feihai;  Zhang, Xianzhou;  Cao, Guangmin;  Cornelissen, Johannes H. C.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
alpine meadow  functional groups  nitrogen chemical form  priming effect  soil microbes  soil organic carbon  Tibetan Plateau