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The proteome landscape of the kingdoms of life 期刊论文
NATURE, 2020
作者:  Arzi, Anat;  Rozenkrantz, Liron;  Gorodisky, Lior;  Rozenkrantz, Danit;  Holtzman, Yael;  Ravia, Aharon;  Bekinschtein, Tristan A.;  Galperin, Tatyana;  Krimchansky, Ben-Zion;  Cohen, Gal;  Oksamitni, Anna;  Aidinoff, Elena;  Sacher, Yaron;  Sobel, Noam
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

Proteins carry out the vast majority of functions in all biological domains, but for technological reasons their large-scale investigation has lagged behind the study of genomes. Since the first essentially complete eukaryotic proteome was reported(1), advances in mass-spectrometry-based proteomics(2)have enabled increasingly comprehensive identification and quantification of the human proteome(3-6). However, there have been few comparisons across species(7,8), in stark contrast with genomics initiatives(9). Here we use an advanced proteomics workflow-in which the peptide separation step is performed by a microstructured and extremely reproducible chromatographic system-for the in-depth study of 100 taxonomically diverse organisms. With two million peptide and 340,000 stringent protein identifications obtained in a standardized manner, we double the number of proteins with solid experimental evidence known to the scientific community. The data also provide a large-scale case study for sequence-based machine learning, as we demonstrate by experimentally confirming the predicted properties of peptides fromBacteroides uniformis. Our results offer a comparative view of the functional organization of organisms across the entire evolutionary range. A remarkably high fraction of the total proteome mass in all kingdoms is dedicated to protein homeostasis and folding, highlighting the biological challenge of maintaining protein structure in all branches of life. Likewise, a universally high fraction is involved in supplying energy resources, although these pathways range from photosynthesis through iron sulfur metabolism to carbohydrate metabolism. Generally, however, proteins and proteomes are remarkably diverse between organisms, and they can readily be explored and functionally compared at www.proteomesoflife.org.


  
Improving SWE Estimation With Data Assimilation: The Influence of Snow Depth Observation Timing and Uncertainty 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (5)
作者:  Smyth, Eric J.;  Raleigh, Mark S.;  Small, Eric E.
收藏  |  浏览/下载:9/0  |  提交时间:2020/05/13
SWE  Assimilation  Particle Filter  Snow Depth  Observation Timing  Snow Density  
Ice front blocking of ocean heat transport to an Antarctic ice shelf 期刊论文
NATURE, 2020, 578 (7796) : 568-+
作者:  Alexandrov, Ludmil B.;  Kim, Jaegil;  Haradhvala, Nicholas J.;  Huang, Mi Ni;  Ng, Alvin Wei Tian;  Wu, Yang;  Boot, Arnoud;  Covington, Kyle R.;  Gordenin, Dmitry A.;  Bergstrom, Erik N.;  Islam, S. M. Ashiqul;  Lopez-Bigas, Nuria;  Klimczak, Leszek J.;  McPherson, John R.;  Morganella, Sandro;  Sabarinathan, Radhakrishnan;  Wheeler, David A.;  Mustonen, Ville;  Getz, Gad;  Rozen, Steven G.;  Stratton, Michael R.
收藏  |  浏览/下载:12/0  |  提交时间:2020/05/13

The front of the Getz Ice Shelf in West Antarctica creates an abrupt topographic step that deflects ocean currents, suppressing 70% of the heat delivery to the ice sheet.


Mass loss from the Antarctic Ice Sheet to the ocean has increased in recent decades, largely because the thinning of its floating ice shelves has allowed the outflow of grounded ice to accelerate(1,2). Enhanced basal melting of the ice shelves is thought to be the ultimate driver of change(2,3), motivating a recent focus on the processes that control ocean heat transport onto and across the seabed of the Antarctic continental shelf towards the ice(4-6). However, the shoreward heat flux typically far exceeds that required to match observed melt rates(2,7,8), suggesting that other critical controls exist. Here we show that the depth-independent (barotropic) component of the heat flow towards an ice shelf is blocked by the marked step shape of the ice front, and that only the depth-varying (baroclinic) component, which is typically much smaller, can enter the sub-ice cavity. Our results arise from direct observations of the Getz Ice Shelf system and laboratory experiments on a rotating platform. A similar blocking of the barotropic component may occur in other areas with comparable ice-bathymetry configurations, which may explain why changes in the density structure of the water column have been found to be a better indicator of basal melt rate variability than the heat transported onto the continental shelf(9). Representing the step topography of the ice front accurately in models is thus important for simulating ocean heat fluxes and induced melt rates.


  
Snow Depth Patterns in a High Mountain Andean Catchment from Satellite Optical Tristereoscopic Remote Sensing 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (2)
作者:  Shaw, Thomas E.;  Gascoin, Simon;  Mendoza, Pablo A.;  Pellicciotti, Francesca;  McPhee, James
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
Snow depth  Pleiades  Chile  Mountain  LiDAR  
Water Table Depth and Soil Salinization: From Pore-Scale Processes to Field-Scale Responses 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (2)
作者:  Shokri-Kuehni, Salome M. S.;  Raaijmakers, Bernadette;  Kurz, Theresa;  Or, Dani;  Helmig, Rainer;  Shokri, Nima
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/02
saline water evaporation  soil salinization  salt precipitation  soil texture  water table depth  
Modeling the Snow Depth Variability With a High-Resolution Lidar Data Set and Nonlinear Terrain Dependency 期刊论文
WATER RESOURCES RESEARCH, 2019
作者:  Skaugen, T.;  Melvold, K.
收藏  |  浏览/下载:5/0  |  提交时间:2020/02/16
Snow depth distribution  Laser scan of snow depth  snow depth distribution model  
Quantifying Uncertainties in Snow Depth Mapping From Structure From Motion Photogrammetry in an Alpine Area 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (9) : 7772-7783
作者:  Goetz, Jason;  Brenning, Alexander
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27
remote sensing of snow  structure from motion  unmanned aerial vehicle  snow depth  uncertainty analysis  high spatial resolution  
Zones of influence for soil organic matter dynamics: A conceptual framework for data and models 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Cagnarini, Claudia;  Blyth, Eleanor;  Emmett, Bridget A.;  Evans, Chris D.;  Griffiths, Robert, I;  Keith, Aidan;  Jones, Laurence;  Lebron, Inma;  McNamara, Niall P.;  Puissant, Jeremy;  Reinsch, Sabine;  Robinson, David A.;  Rowe, Edwin C.;  Thomas, Amy R. C.;  Smart, Simon M.;  Whitaker, Jeanette;  Cosby, Bernard J.
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/27
conceptual framework  connectivity  soil depth  SOM model  SOM persistence  sustainable land management  UNSDG-15  zones of influence  
A compilation of multitemporal TLS snow depth distribution maps at the Weisssee snow research site (Kaunertal, Austria) 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (6) : 5154-5164
作者:  Fey, C.;  Schattan, P.;  Helfricht, K.;  Schoeber, J.
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/26
snow depth maps  lidar  spatial snow distribution  TLS  interannual and intraannual snow data  Alpine snow research site  
Foraging efficiency and size matching in a plant-pollinator community: the importance of sugar content and tongue length 期刊论文
ECOLOGY LETTERS, 2019, 22 (3) : 469-479
作者:  Klumpers, Saskia G. T.;  Stang, Martina;  Klinkhamer, Peter G. L.
收藏  |  浏览/下载:0/0  |  提交时间:2019/04/09
Asteraceae  foraging efficiency  handling time  interaction probability  nectar tube depth  optimal foraging  pollination  proboscis length  size matching