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A highly conserved core bacterial microbiota with nitrogen-fixation capacity inhabits the xylem sap in maize plants 期刊论文
Nature Communications, 2022
作者:  Zhang, Liyu;  Zhang, Meiling;  Huang, Shuyu;  Li, Lujun;  Gao, Qiang;  Wang, Yin;  Zhang, Shuiqing;  Huang, Shaomin;  Yuan, Liang;  Wen, Yanchen;  Liu, Kailou;  Yu, Xichu;  Li, Dongchu;  Zhang, Lu;  Xu, Xinpeng;  Wei, Hailei;  He, Ping;  Zhou, Wei;  Philippot, Laurent;  Ai, Chao
收藏  |  浏览/下载:16/0  |  提交时间:2022/06/24
Long-term nitrogen input alters plant and soil bacterial, but not fungal beta diversity in a semiarid grassland 期刊论文
Global Change Biology, 2021
作者:  Weixing Liu;  Lingli Liu;  Xian Yang;  Meifeng Deng;  Zhou Wang;  Pandeng Wang;  Sen Yang;  Ping Li;  Ziyang Peng;  Lu Yang;  Lin Jiang
收藏  |  浏览/下载:9/0  |  提交时间:2021/06/07
A widespread pathway for substitution of adenine by diaminopurine in phage genomes 期刊论文
Science, 2021
作者:  Yan Zhou;  Xuexia Xu;  Yifeng Wei;  Yu Cheng;  Yu Guo;  Ivan Khudyakov;  Fuli Liu;  Ping He;  Zhangyue Song;  Zhi Li;  Yan Gao;  Ee Lui Ang;  Huimin Zhao;  Yan Zhang;  Suwen Zhao
收藏  |  浏览/下载:14/0  |  提交时间:2021/05/07
Network-based screen in iPSC-derived cells reveals therapeutic candidate for heart valve disease 期刊论文
Science, 2021
作者:  Christina V. Theodoris;  Ping Zhou;  Lei Liu;  Yu Zhang;  Tomohiro Nishino;  Yu Huang;  Aleksandra Kostina;  Sanjeev S. Ranade;  Casey A. Gifford;  Vladimir Uspenskiy;  Anna Malashicheva;  Sheng Ding;  Deepak Srivastava
收藏  |  浏览/下载:9/0  |  提交时间:2021/02/17
Role of iodine oxoacids in atmospheric aerosol nucleation 期刊论文
Science, 2021
作者:  Xu-Cheng He;  Yee Jun Tham;  Lubna Dada;  Mingyi Wang;  Henning Finkenzeller;  Dominik Stolzenburg;  Siddharth Iyer;  Mario Simon;  Andreas Kürten;  Jiali Shen;  Birte Rörup;  Matti Rissanen;  Siegfried Schobesberger;  Rima Baalbaki;  Dongyu S. Wang;  Theodore K. Koenig;  Tuija Jokinen;  Nina Sarnela;  Lisa J. Beck;  João Almeida;  Stavros Amanatidis;  António Amorim;  Farnoush Ataei;  Andrea Baccarini;  Barbara Bertozzi;  Federico Bianchi;  Sophia Brilke;  Lucía Caudillo;  Dexian Chen;  Randall Chiu;  Biwu Chu;  António Dias;  Aijun Ding;  Josef Dommen;  Jonathan Duplissy;  Imad El Haddad;  Loïc Gonzalez Carracedo;  Manuel Granzin;  Armin Hansel;  Martin Heinritzi;  Victoria Hofbauer;  Heikki Junninen;  Juha Kangasluoma;  Deniz Kemppainen;  Changhyuk Kim;  Weimeng Kong;  Jordan E. Krechmer;  Aleksander Kvashin;  Totti Laitinen;  Houssni Lamkaddam;  Chuan Ping Lee;  Katrianne Lehtipalo;  Markus Leiminger;  Zijun Li;  Vladimir Makhmutov;  Hanna E. Manninen;  Guillaume Marie;  Ruby Marten;  Serge Mathot;  Roy L. Mauldin;  Bernhard Mentler;  Ottmar Möhler;  Tatjana Müller;  Wei Nie;  Antti Onnela;  Tuukka Petäjä;  Joschka Pfeifer;  Maxim Philippov;  Ananth Ranjithkumar;  Alfonso Saiz-Lopez;  Imre Salma;  Wiebke Scholz;  Simone Schuchmann;  Benjamin Schulze;  Gerhard Steiner;  Yuri Stozhkov;  Christian Tauber;  António Tomé;  Roseline C. Thakur;  Olli Väisänen;  Miguel Vazquez-Pufleau;  Andrea C. Wagner;  Yonghong Wang;  Stefan K. Weber;  Paul M. Winkler;  Yusheng Wu;  Mao Xiao;  Chao Yan;  Qing Ye;  Arttu Ylisirniö;  Marcel Zauner-Wieczorek;  Qiaozhi Zha;  Putian Zhou;  Richard C. Flagan;  Joachim Curtius;  Urs Baltensperger;  Markku Kulmala;  Veli-Matti Kerminen;  Theo Kurtén;  Neil M. Donahue;  Rainer Volkamer;  Jasper Kirkby;  Douglas R. Worsnop;  Mikko Sipilä
收藏  |  浏览/下载:12/0  |  提交时间:2021/02/17
Effects of human disturbance activities and environmental change factors on terrestrial nitrogen fixation 期刊论文
Global Change Biology, 2020
作者:  Mianhai Zheng;  Zhenghu Zhou;  Ping Zhao;  Yiqi Luo;  Qing Ye;  Kerong Zhang;  Liang Song;  Jiangming Mo
收藏  |  浏览/下载:7/0  |  提交时间:2020/09/22
Amplified Madden-Julian oscillation impacts in the Pacific-North America region 期刊论文
NATURE CLIMATE CHANGE, 2020, 10 (7) : 654-+
作者:  Zhou, Wenyu;  Yang, Da;  Xie, Shang-Ping;  Ma, Jing
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/06
Structure of nevanimibe-bound tetrameric human ACAT1 期刊论文
NATURE, 2020, 581 (7808) : 339-U214
作者:  Ma, Xiyu;  Claus, Lucas A. N.;  Leslie, Michelle E.;  Tao, Kai;  Wu, Zhiping;  Liu, Jun;  Yu, Xiao;  Li, Bo;  Zhou, Jinggeng;  Savatin, Daniel V.;  Peng, Junmin;  Tyler, Brett M.;  Heese, Antje;  Russinova, Eugenia;  He, Ping;  Shan, Libo
收藏  |  浏览/下载:28/0  |  提交时间:2020/07/03

The structure of human ACAT1 in complex with the inhibitor nevanimibe is resolved by cryo-electron microscopy.


Cholesterol is an essential component of mammalian cell membranes, constituting up to 50% of plasma membrane lipids. By contrast, it accounts for only 5% of lipids in the endoplasmic reticulum (ER)(1). The ER enzyme sterol O-acyltransferase 1 (also named acyl-coenzyme A:cholesterol acyltransferase, ACAT1) transfers a long-chain fatty acid to cholesterol to form cholesteryl esters that coalesce into cytosolic lipid droplets. Under conditions of cholesterol overload, ACAT1 maintains the low cholesterol concentration of the ER and thereby has an essential role in cholesterol homeostasis(2,3). ACAT1 has also been implicated in Alzheimer'  s disease(4), atherosclerosis(5) and cancers(6). Here we report a cryo-electron microscopy structure of human ACAT1 in complex with nevanimibe(7), an inhibitor that is in clinical trials for the treatment of congenital adrenal hyperplasia. The ACAT1 holoenzyme is a tetramer that consists of two homodimers. Each monomer contains nine transmembrane helices (TMs), six of which (TM4-TM9) form a cavity that accommodates nevanimibe and an endogenous acyl-coenzyme A. This cavity also contains a histidine that has previously been identified as essential for catalytic activity(8). Our structural data and biochemical analyses provide a physical model to explain the process of cholesterol esterification, as well as details of the interaction between nevanimibe and ACAT1, which may help to accelerate the development of ACAT1 inhibitors to treat related diseases.


  
A neurotransmitter produced by gut bacteria modulates host sensory behaviour 期刊论文
NATURE, 2020
作者:  Zhao, Xiaoxu;  Song, Peng;  Wang, Chengcai;  Riis-Jensen, Anders C.;  Fu, Wei;  Deng, Ya;  Wan, Dongyang;  Kang, Lixing;  Ning, Shoucong;  Dan, Jiadong;  Venkatesan, T.;  Liu, Zheng;  Zhou, Wu;  Thygesen, Kristian S.;  Luo, Xin;  Pennycook, Stephen J.;  Loh, Kian Ping
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

A neuromodulator produced by commensalProvidenciabacteria that colonize the gut ofCaenorhabditis elegansmimics the functions of the cognate host molecule to manipulate a sensory decision of the host.


Animals coexist in commensal, pathogenic or mutualistic relationships with complex communities of diverse organisms, including microorganisms(1). Some bacteria produce bioactive neurotransmitters that have previously been proposed to modulate nervous system activity and behaviours of their hosts(2,3). However, the mechanistic basis of this microbiota-brain signalling and its physiological relevance are largely unknown. Here we show that inCaenorhabditis elegans, the neuromodulator tyramine produced by commensalProvidenciabacteria, which colonize the gut, bypasses the requirement for host tyramine biosynthesis and manipulates a host sensory decision. Bacterially produced tyramine is probably converted to octopamine by the host tyramine beta-hydroxylase enzyme. Octopamine, in turn, targets the OCTR-1 octopamine receptor on ASH nociceptive neurons to modulate an aversive olfactory response. We identify the genes that are required for tyramine biosynthesis inProvidencia, and show that these genes are necessary for the modulation of host behaviour. We further find thatC. eleganscolonized byProvidenciapreferentially select these bacteria in food choice assays, and that this selection bias requires bacterially produced tyramine and host octopamine signalling. Our results demonstrate that a neurotransmitter produced by gut bacteria mimics the functions of the cognate host molecule to override host control of a sensory decision, and thereby promotes fitness of both the host and the microorganism.


  
A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by T-reg cells 期刊论文
NATURE, 2020
作者:  Ma, Xiyu;  Claus, Lucas A. N.;  Leslie, Michelle E.;  Tao, Kai;  Wu, Zhiping;  Liu, Jun;  Yu, Xiao;  Li, Bo;  Zhou, Jinggeng;  Savatin, Daniel V.;  Peng, Junmin;  Tyler, Brett M.;  Heese, Antje;  Russinova, Eugenia;  He, Ping;  Shan, Libo
收藏  |  浏览/下载:40/0  |  提交时间:2020/07/03

Genetic variations underlying susceptibility to complex autoimmune and allergic diseases are concentrated within noncoding regulatory elements termed enhancers(1). The functions of a large majority of disease-associated enhancers are unknown, in part owing to their distance from the genes they regulate, a lack of understanding of the cell types in which they operate, and our inability to recapitulate the biology of immune diseases in vitro. Here, using shared synteny to guide loss-of-function analysis of homologues of human enhancers in mice, we show that the prominent autoimmune and allergic disease risk locus at chromosome 11q13.5(2-7) contains a distal enhancer that is functional in CD4(+) regulatory T (T-reg) cells and required for T-reg-mediated suppression of colitis. The enhancer recruits the transcription factors STAT5 and NF-kappa B to mediate signal-driven expression of Lrrc32, which encodes the protein glycoprotein A repetitions predominant (GARP). Whereas disruption of the Lrrc32 gene results in early lethality, mice lacking the enhancer are viable but lack GARP expression in Foxp3(+) T-reg cells, which are unable to control colitis in a cell-transfer model of the disease. In human T-reg cells, the enhancer forms conformational interactions with the promoter of LRRC32 and enhancer risk variants are associated with reduced histone acetylation and GARP expression. Finally, functional fine-mapping of 11q13.5 using CRISPR-activation (CRISPRa) identifies a CRISPRa-responsive element in the vicinity of risk variant rs11236797 capable of driving GARP expression. These findings provide a mechanistic basis for association of the 11q13.5 risk locus with immune-mediated diseases and identify GARP as a potential target in their therapy.


Shared synteny guides loss-of-function analysis of human enhancer homologues in mice, identifying a distal enhancer at the autoimmune and allergic disease risk locus at chromosome 11q13.5 whose function in regulatory T cells provides a mechanistic basis for its role in disease.