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The Great Oxidation Event expanded the genetic repertoire of arsenic metabolism and cycling 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (19) : 10414-10421
作者:  Chen, Song-Can;  Sun, Guo-Xin;  Yan, Yu;  Konstantinidis, Konstantinos T.;  Zhang, Si-Yu;  Deng, Ye;  Li, Xiao-Min;  Cui, Hui-Ling;  Musat, Florin;  Popp, Denny;  Rosen, Barry P.;  Zhu, Yong-Guan
收藏  |  浏览/下载:21/0  |  提交时间:2020/05/13
arsenic  detoxification  evolution  oxygen  biogeochemistry  
Mutational signature in colorectal cancer caused by genotoxic pks(+)E. coli 期刊论文
NATURE, 2020, 580 (7802) : 269-+
作者:  Lin, Xi;  Li, Mingyue;  Wang, Niandong;  Wu, Yiran;  Luo, Zhipu;  Guo, Shimeng;  Han, Gye-Won;  Li, Shaobai;  Yue, Yang;  Wei, Xiaohu;  Xie, Xin;  Chen, Yong;  Zhao, Suwen;  Wu, Jian;  Lei, Ming;  Xu, Fei
收藏  |  浏览/下载:22/0  |  提交时间:2020/07/03

Various species of the intestinal microbiota have been associated with the development of colorectal cancer(1,2), but it has not been demonstrated that bacteria have a direct role in the occurrence of oncogenic mutations. Escherichia coli can carry the pathogenicity island pks, which encodes a set of enzymes that synthesize colibactin(3). This compound is believed to alkylate DNA on adenine residues(4,5) and induces double-strand breaks in cultured cells(3). Here we expose human intestinal organoids to genotoxic pks(+)E. coli by repeated luminal injection over five months. Whole-genome sequencing of clonal organoids before and after this exposure revealed a distinct mutational signature that was absent from organoids injected with isogenic pks-mutant bacteria. The same mutational signature was detected in a subset of 5,876 human cancer genomes from two independent cohorts, predominantly in colorectal cancer. Our study describes a distinct mutational signature in colorectal cancer and implies that the underlying mutational process results directly from past exposure to bacteria carrying the colibactin-producing pks pathogenicity island.


Organoids derived from human intestinal cells that are co-cultured with bacteria carrying the genotoxic pks(+) island develop a distinct mutational signature associated with colorectal cancer.


  
Remarkable nucleation and growth of ultrafine particles from vehicular exhaust 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (7) : 3427-3432
作者:  Guo, Song;  Hu, Min;  Peng, Jianfei;  Wu, Zhijun;  Zamora, Misti L.;  Shang, Dongjie;  Du, Zhuofei;  Zheng, Jing;  Fang, Xin;  Tang, Rongzhi;  Wu, Yusheng;  Zeng, Limin;  Shuai, Shijin;  Zhang, Wenbin;  Wang, Yuan;  Ji, Yuemeng;  Li, Yixin;  Zhang, Annie L.;  Wang, Weigang;  Zhang, Fang;  Zhao, Jiayun;  Gong, Xiaoli;  Wang, Chunyu;  Molina, Mario J.;  Zhang, Renyi
收藏  |  浏览/下载:12/0  |  提交时间:2020/05/13
new particle formation  nucleation  ultrafine particles  growth  organics  
Size-segregated characteristics of organic carbon (OC), elemental carbon (EC) and organic matter in particulate matter (PM) emitted from different types of ships in China 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (3) : 1549-1564
作者:  Zhang, Fan;  Guo, Hai;  Chen, Yingjun;  Matthias, Volker;  Zhang, Yan;  Yang, Xin;  Chen, Jianmin
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/02
Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells 期刊论文
NATURE, 2020, 577 (7792) : 676-+
作者:  Zhao, Ruozhu;  Chen, Xin;  Ma, Weiwei;  Zhang, Jinyu;  Guo, Jie;  Zhong, Xiu;  Yao, Jiacheng;  Sun, Jiahui;  Rubinfien, Julian;  Zhou, Xuyu;  Wang, Jianbin;  Qi, Hai
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/03

Empirical and anecdotal evidence has associated stress with accelerated hair greying (formation of unpigmented hairs)(1,2), but so far there has been little scientific validation of this link. Here we report that, in mice, acute stress leads to hair greying through the fast depletion of melanocyte stem cells. Using a combination of adrenalectomy, denervation, chemogenetics(3,4), cell ablation and knockout of the adrenergic receptor specifically in melanocyte stem cells, we find that the stress-induced loss of melanocyte stem cells is independent of immune attack or adrenal stress hormones. Instead, hair greying results from activation of the sympathetic nerves that innervate the melanocyte stem-cell niche. Under conditions of stress, the activation of these sympathetic nerves leads to burst release of the neurotransmitter noradrenaline (also known as norepinephrine). This causes quiescent melanocyte stem cells to proliferate rapidly, and is followed by their differentiation, migration and permanent depletion from the niche. Transient suppression of the proliferation of melanocyte stem cells prevents stress-induced hair greying. Our study demonstrates that neuronal activity that is induced by acute stress can drive a rapid and permanent loss of somatic stem cells, and illustrates an example in which the maintenance of somatic stem cells is directly influenced by the overall physiological state of the organism.


Stress induces hair greying in mice through depletion of melanocyte stem cells, which is mediated by the activation of sympathetic nerves rather than through immune attack or adrenal stress hormones.


  
Improved protein structure prediction using potentials from deep learning 期刊论文
NATURE, 2020, 577 (7792) : 706-+
作者:  Ma, Runze;  Cao, Duanyun;  Zhu, Chongqin;  Tian, Ye;  Peng, Jinbo;  Guo, Jing;  Chen, Ji;  Li, Xin-Zheng;  Francisco, Joseph S.;  Zeng, Xiao Cheng;  Xu, Li-Mei;  Wang, En-Ge;  Jiang, Ying
收藏  |  浏览/下载:142/0  |  提交时间:2020/07/03

Protein structure prediction can be used to determine the three-dimensional shape of a protein from its amino acid sequence(1). This problem is of fundamental importance as the structure of a protein largely determines its function(2)  however, protein structures can be difficult to determine experimentally. Considerable progress has recently been made by leveraging genetic information. It is possible to infer which amino acid residues are in contact by analysing covariation in homologous sequences, which aids in the prediction of protein structures(3). Here we show that we can train a neural network to make accurate predictions of the distances between pairs of residues, which convey more information about the structure than contact predictions. Using this information, we construct a potential of mean force(4) that can accurately describe the shape of a protein. We find that the resulting potential can be optimized by a simple gradient descent algorithm to generate structures without complex sampling procedures. The resulting system, named AlphaFold, achieves high accuracy, even for sequences with fewer homologous sequences. In the recent Critical Assessment of Protein Structure Prediction(5) (CASP13)-a blind assessment of the state of the field-AlphaFold created high-accuracy structures (with template modelling (TM) scores(6) of 0.7 or higher) for 24 out of 43 free modelling domains, whereas the next best method, which used sampling and contact information, achieved such accuracy for only 14 out of 43 domains. AlphaFold represents a considerable advance in protein-structure prediction. We expect this increased accuracy to enable insights into the function and malfunction of proteins, especially in cases for which no structures for homologous proteins have been experimentally determined(7).


  
East Asian Study of Tropospheric Aerosols and their Impact on Regional Clouds, Precipitation, and Climate (EAST-AIR(CPC)) 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2019, 124 (23) : 13026-13054
作者:  Li, Zhanqing;  Wang, Yuan;  Guo, Jianping;  Zhao, Chuanfeng;  Cribb, Maureen C.;  Dong, Xiquan;  Fan, Jiwen;  Gong, Daoyi;  Huang, Jianping;  Jiang, Mengjiao;  Jiang, Yiquan;  Lee, S. -S.;  Li, Huan;  Li, Jiming;  Liu, Jianjun;  Qian, Yun;  Rosenfeld, Daniel;  Shan, Siyu;  Sun, Yele;  Wang, Huijun;  Xin, Jinyuan;  Yan, Xin;  Yang, Xin;  Yang, Xiu-Qun;  Zhang, Fang;  Zheng, Youtong
收藏  |  浏览/下载:13/0  |  提交时间:2020/02/17
East Asian Study of Tropospheric Aerosols and their Impact on Regional Clouds, Precipitation, and Climate (EAST-AIR(CPC)) 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2019
作者:  Li, Zhanqing;  Wang, Yuan;  Guo, Jianping;  Zhao, Chuanfeng;  Cribb, Maureen;  Dong, Xiquan;  Fan, Jiwen;  Gong, Daoyi;  Huang, Jianping;  Jiang, Mengjiao;  Jiang, Yiquan;  Lee, S-S;  Li, Huan;  Li, Jiming;  Liu, Jianjun;  Qian, Yun;  Rosenfeld, Daniel;  Shan, Siyu;  Sun, Yele;  Wang, Huijun;  Xin, Jinyuan;  Yan, Xin;  Yang, Xin;  Yang, Xiu-qun;  Zhang, Fang;  Zheng, Youtong
收藏  |  浏览/下载:9/0  |  提交时间:2020/02/17
Multi-model analysis of climate impacts on plant photosynthesis in China during 2000-2015 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2019, 39 (15) : 5539-5555
作者:  Yan, Hao;  Wang, Shao-Qiang;  Cao, Yun;  Xu, Ling-Ling;  Wu, Men-xin;  Cheng, Lu;  Mao, Liu-Xi;  Zhang, Xian-Zhou;  Liu, Yun-Fen;  Wang, Yan-Fen;  Chen, Shi-Ping;  Li, Ying-Nian;  Han, Shi-Jie;  Zhou, Guo-Yi;  Zhang, Yi-Ping;  Shugart, Herman H.;  Wang, Jun-Bang;  Zhao, Feng-Hua
收藏  |  浏览/下载:13/0  |  提交时间:2020/02/17
climate change  dry/wet climate  Gross primary production  meteorological factors  multi-model analysis  
Gate-controlled reversible rectifying behaviour in tunnel contacted atomically-thin MoS2 transistor 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Li, Xiao-Xi;  Fan, Zhi-Qiang;  Liu, Pei-Zhi;  Chen, Mao-Lin;  Liu, Xin;  Jia, Chuan-Kun;  Sun, Dong-Ming;  Jiang, Xiang-Wei;  Han, Zheng;  Bouchiat, Vincent;  Guo, Jun-Jie;  Chen, Jian-Hao;  Zhang, Zhi-Dong
收藏  |  浏览/下载:19/0  |  提交时间:2019/11/27