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Autophagy promotes immune evasion of pancreatic cancer by degrading MHC-I 期刊论文
NATURE, 2020, 581 (7806) : 100-+
作者:  Waszak, Sebastian M.;  Robinson, Giles W.;  Gudenas, Brian L.;  Smith, Kyle S.;  Forget, Antoine;  Kojic, Marija;  Garcia-Lopez, Jesus;  Hadley, Jennifer;  Hamilton, Kayla V.;  Indersie, Emilie;  Buchhalter, Ivo;  Kerssemakers, Jules;  Jager, Natalie;  Sharma, Tanvi;  Rausch, Tobias;  Kool, Marcel;  Sturm, Dominik;  Jones, David T. W.;  Vasilyeva, Aksana;  Tatevossian, Ruth G.;  Neale, Geoffrey;  Lombard, Berangere;  Loew, Damarys;  Nakitandwe, Joy;  Rusch, Michael;  Bowers, Daniel C.;  Bendel, Anne;  Partap, Sonia;  Chintagumpala, Murali;  Crawford, John;  Gottardo, Nicholas G.;  Smith, Amy;  Dufour, Christelle;  Rutkowski, Stefan;  Eggen, Tone;  Wesenberg, Finn;  Kjaerheim, Kristina;  Feychting, Maria;  Lannering, Birgitta;  Schuz, Joachim;  Johansen, Christoffer;  Andersen, Tina V.;  Roosli, Martin;  Kuehni, Claudia E.;  Grotzer, Michael;  Remke, Marc;  Puget, Stephanie;  Pajtler, Kristian W.;  Milde, Till;  Witt, Olaf;  Ryzhova, Marina;  Korshunov, Andrey;  Orr, Brent A.;  Ellison, David W.;  Brugieres, Laurence;  Lichter, Peter;  Nichols, Kim E.;  Gajjar, Amar;  Wainwright, Brandon J.;  Ayrault, Olivier;  Korbel, Jan O.;  Northcott, Paul A.;  Pfister, Stefan M.
收藏  |  浏览/下载:38/0  |  提交时间:2020/07/03

Immune evasion is a major obstacle for cancer treatment. Common mechanisms of evasion include impaired antigen presentation caused by mutations or loss of heterozygosity of the major histocompatibility complex class I (MHC-I), which has been implicated in resistance to immune checkpoint blockade (ICB) therapy(1-3). However, in pancreatic ductal adenocarcinoma (PDAC), which is resistant to most therapies including ICB4, mutations that cause loss of MHC-I are rarely found(5) despite the frequent downregulation of MHC-I expression(6-8). Here we show that, in PDAC, MHC-I molecules are selectively targeted for lysosomal degradation by an autophagy-dependent mechanism that involves the autophagy cargo receptor NBR1. PDAC cells display reduced expression of MHC-I at the cell surface and instead demonstrate predominant localization within autophagosomes and lysosomes. Notably, inhibition of autophagy restores surface levels of MHC-I and leads to improved antigen presentation, enhanced anti-tumour T cell responses and reduced tumour growth in syngeneic host mice. Accordingly, the anti-tumour effects of autophagy inhibition are reversed by depleting CD8(+) T cells or reducing surface expression of MHC-I. Inhibition of autophagy, either genetically or pharmacologically with chloroquine, synergizes with dual ICB therapy (anti-PD1 and anti-CTLA4 antibodies), and leads to an enhanced anti-tumour immune response. Our findings demonstrate a role for enhanced autophagy or lysosome function in immune evasion by selective targeting of MHC-I molecules for degradation, and provide a rationale for the combination of autophagy inhibition and dual ICB therapy as a therapeutic strategy against PDAC.


Inhibition of the autophagy-lysosome system upregulates surface expression of MHC class I proteins and enhances antigen presentation, and evokes a potent anti-tumour immune response that is mediated by CD8(+) T cells.


  
Neuronal programming by microbiota regulates intestinal physiology 期刊论文
NATURE, 2020, 578 (7794) : 284-+
作者:  Li, Yilong;  Roberts, Nicola D.;  Wala, Jeremiah A.;  Shapira, Ofer;  Schumacher, Steven E.;  Kumar, Kiran;  Khurana, Ekta;  Waszak, Sebastian;  Korbel, Jan O.;  Haber, James E.;  Imielinski, Marcin;  Weischenfeldt, Joachim;  Beroukhim, Rameen;  Campbell, Peter J.;  Akdemir, Kadir C.;  Alvarez, Eva G.;  Baez-Ortega, Adrian;  Boutros, Paul C.;  Bowtell, David D. L.;  Brors, Benedikt;  Burns, Kathleen H.;  Chan, Kin;  Chen, Ken;  Cortes-Ciriano, Isidro;  Dueso-Barroso, Ana;  Dunford, Andrew J.;  Edwards, Paul A.;  Estivill, Xavier;  Etemadmoghadam, Dariush;  Feuerbach, Lars;  Fink, J. Lynn;  Frenkel-Morgenstern, Milana;  Garsed, Dale W.;  Gerstein, Mark;  Gordenin, Dmitry A.;  Haan, David;  Hess, Julian M.;  Hutter, Barbara;  Jones, David T. W.;  Ju, Young Seok;  Kazanov, Marat D.;  Klimczak, Leszek J.;  Koh, Youngil;  Lee, Eunjung Alice;  Lee, Jake June-Koo;  Lynch, Andy G.;  Macintyre, Geoff;  Markowetz, Florian;  Martincorena, Inigo;  Martinez-Fundichely, Alexander;  Meyerson, Matthew;  Miyano, Satoru;  Nakagawa, Hidewaki;  Navarro, Fabio C. P.;  Ossowski, Stephan;  Park, Peter J.;  Pearson, John, V;  Puiggros, Montserrat;  Rippe, Karsten;  Roberts, Steven A.;  Rodriguez-Martin, Bernardo;  Scully, Ralph;  Shackleton, Mark;  Sidiropoulos, Nikos;  Sieverling, Lina;  Stewart, Chip;  Torrents, David;  Tubio, Jose M. C.;  Villasante, Izar;  Waddell, Nicola;  Yang, Lixing;  Yao, Xiaotong;  Yoon, Sung-Soo;  Zamora, Jorge;  Zhang, Cheng-Zhong
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Neural control of the function of visceral organs is essential for homeostasis and health. Intestinal peristalsis is critical for digestive physiology and host defence, and is often dysregulated in gastrointestinal disorders(1). Luminal factors, such as diet and microbiota, regulate neurogenic programs of gut motility(2-5), but the underlying molecular mechanisms remain unclear. Here we show that the transcription factor aryl hydrocarbon receptor (AHR) functions as a biosensor in intestinal neural circuits, linking their functional output to the microbial environment of the gut lumen. Using nuclear RNA sequencing of mouse enteric neurons that represent distinct intestinal segments and microbiota states, we demonstrate that the intrinsic neural networks of the colon exhibit unique transcriptional profiles that are controlled by the combined effects of host genetic programs and microbial colonization. Microbiota-induced expression of AHR in neurons of the distal gastrointestinal tract enables these neurons to respond to the luminal environment and to induce expression of neuron-specific effector mechanisms. Neuron-specific deletion of Ahr, or constitutive overexpression of its negative feedback regulator CYP1A1, results in reduced peristaltic activity of the colon, similar to that observed in microbiota-depleted mice. Finally, expression of Ahr in the enteric neurons of mice treated with antibiotics partially restores intestinal motility. Together, our experiments identify AHR signalling in enteric neurons as a regulatory node that integrates the luminal environment with the physiological output of intestinal neural circuits to maintain gut homeostasis and health.


In a mouse model, aryl hydrocarbon receptor signalling in enteric neurons is revealed as a mechanism that helps to maintain gut homeostasis by integrating the luminal environment with the physiology of intestinal neural circuits.


  
Initial results from the New Horizons exploration of 2014 MU69, a small Kuiper Belt object 期刊论文
SCIENCE, 2019, 364 (6441) : 649-+
作者:  Stern, S. A.;  Weaver, H. A.;  Spencer, J. R.;  Olkin, C. B.;  Gladstone, G. R.;  Grundy, W. M.;  Moore, J. M.;  Cruikshank, D. P.;  Elliott, H. A.;  McKinnon, W. B.;  Parker, J. Wm.;  Verbiscer, A. J.;  Young, L. A.;  Aguilar, D. A.;  Albers, J. M.;  Andert, T.;  Andrews, J. P.;  Bagenal, F.;  Banks, M. E.;  Bauer, B. A.;  Bauman, J. A.;  Bechtold, K. E.;  Beddingfield, C. B.;  Behrooz, N.;  Beisser, K. B.;  Benecchi, S. D.;  Bernardoni, E.;  Beyer, R. A.;  Bhaskaran, S.;  Bierson, C. J.;  Binzel, R. P.;  Birath, E. M.;  Bird, M. K.;  Boone, D. R.;  Bowman, A. F.;  Bray, V. J.;  Britt, D. T.;  Brown, L. E.;  Buckley, M. R.;  Buie, M. W.;  Buratti, B. J.;  Burke, L. M.;  Bushman, S. S.;  Careich, B.;  Chaikin, A. L.;  Chavez, C. L.;  Cheng, A. F.;  Colwell, E. J.;  Conard, S. J.;  Conner, M. P.;  Conrad, C. A.;  Cook, J. C.;  Cooper, S. B.;  Custodio, O. S.;  Ore, C. M. Dalle;  Deboy, C. C.;  Dharmavaram, P.;  Dhingra, R. D.;  Dunn, G. F.;  Earle, A. M.;  Egan, A. F.;  Eisig, J.;  El-Maarry, M. R.;  Engelbrecht, C.;  Enke, B. L.;  Ercol, C. J.;  Fattig, E. D.;  Ferrell, C. L.;  Finley, T. J.;  Firer, J.;  Fischetti, J.;  Folkner, W. M.;  Fosbury, M. N.;  Fountain, G. H.;  Freeze, J. M.;  Gabasova, L.;  Glaze, L. S.;  Green, J. L.;  Griffith, G. A.;  Guo, Y.;  Hahn, M.;  Hals, D. W.;  Hamilton, D. P.;  Hamilton, S. A.;  Hanley, J. J.;  Harch, A.;  Harmon, K. A.;  Hart, H. M.;  Hayes, J.;  Hersman, C. B.;  Hill, M. E.;  Hill, T. A.;  Hofgartner, J. D.;  Holdridge, M. E.;  Horanyi, M.;  Hosadurga, A.;  Howard, A. D.;  Howett, C. J. A.;  Jaskulek, S. E.;  Jennings, D. E.;  Jensen, J. R.;  Jones, M. R.;  Kang, H. K.;  Katz, D. J.;  Kaufmann, D. E.;  Kavelaars, J. J.;  Keane, J. T.;  Keleher, G. P.;  Kinczyk, M.;  Kochte, M. C.;  Kolmnann, P.;  Krimigis, S. M.;  Kruizinga, G. L.;  Kusnierkiewicz, D. Y.;  Lahr, M. S.;  Lauer, T. R.;  Lawrence, G. B.;  Lee, J. E.;  Lessac-Chenen, E. J.;  Linscott, I. R.;  Lisse, C. M.;  Lunsford, A. W.;  Mages, D. M.;  Mallder, V. A.;  Martin, N. P.;  May, B. H.;  McComas, D. J.;  MeNutt, R. L., Jr.;  Mehoke, D. S.;  Mehoke, T. S.;  Nelson, D. S.;  Nguyen, H. D.;  Nunez, J. I.;  Ocampo, A. C.;  Owen, W. M.;  Oxton, G. K.;  Parker, A. H.;  Patzold, M.;  Pelgrift, J. Y.;  Pelletier, F. J.;  Pineau, J. P.;  Piquette, M. R.;  Porter, S. B.;  Protopapa, S.;  Quirico, E.;  Redfern, J. A.;  Regiec, A. L.;  Reitsema, H. J.;  Reuter, D. C.;  Richardson, D. C.;  Riedel, J. E.;  Ritterbush, M. A.;  Robbins, S. J.;  Rodgers, D. J.;  Rogers, G. D.;  Rose, D. M.;  Rosendal, P. E.;  Runyon, K. D.;  Ryschkewitsch, M. G.;  Saina, M. M.;  Salinas, M. J.;  Schenk, P. M.;  Scherrer, J. R.;  Schlei, W. R.;  Schmitt, B.;  Schultz, D. J.;  Schurr, D. C.;  Scipioni, F.;  Sepan, R. L.;  Shelton, R. G.;  Showalter, M. R.;  Simon, M.;  Singer, K. N.;  Stahlheber, E. W.;  Stanbridge, D. R.;  Stansberry, J. A.;  Steffi, A. J.;  Strobel, D. F.;  Stothoff, M. M.;  Stryk, T.;  Stuart, J. M.;  Summers, M. E.;  Tapley, M. B.;  Taylor, A.;  Taylor, H. W.;  Tedford, R. M.;  Throop, H. B.;  Turner, L. S.;  Umurhan, O. M.;  Van Eck, J.;  Velez, D.;  Versteeg, M. H.;  Vincent, M. A.;  Webbert, R. W.;  Weidner, S. E.;  Ii, G. E. Weigle;  Wendel, J. R.;  White, O. L.;  Whittenburg, K. E.;  Williams, B. G.;  Williams, K. E.;  Williams, S. P.;  Wimters, H. L.;  Zangari, A. M.;  Zurbuchen, T. H.
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27
Environmental benefits of leaving offshore infrastructure in the ocean 期刊论文
FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, 2018, 16 (10) : 571-578
作者:  Fowler, Ashley M.;  Jorgensen, Anne-Mette;  Svendsen, Jon C.;  Macreadie, Peter I.;  Jones, Daniel O. B.;  Boon, Arjen R.;  Booth, David J.;  Brabant, Robin;  Callahan, Emily;  Claisse, Jeremy T.;  Dahlgren, Thomas G.;  Degraer, Steven;  Dokken, Quenton R.;  Gill, Andrew B.;  Johns, David G.;  Leewis, Robert J.;  Lindeboom, Han J.;  Linden, Olof;  May, Roel;  Murk, Albertinka J.;  Ottersen, Geir;  Schroeder, Donna M.;  Shastri, Sunil M.;  Teilmann, Jonas;  Todd, Victoria;  Van Hoey, Gert;  Vanaverbeke, Jan;  Coolen, Joop W. P.
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Latitudinal limits to the predicted increase of the peatland carbon sink with warming 期刊论文
NATURE CLIMATE CHANGE, 2018, 8 (10) : 907-+
作者:  Gallego-Sala, Angela, V;  Charman, Dan J.;  Brewer, Simon;  Page, Susan E.;  Prentice, I. Colin;  Friedlingstein, Pierre;  Moreton, Steve;  Amesbury, Matthew J.;  Beilman, David W.;  Bjorck, Svante;  Blyakharchuk, Tatiana;  Bochicchio, Christopher;  Booth, Robert K.;  Bunbury, Joan;  Camill, Philip;  Carless, Donna;  Chimner, Rodney A.;  Clifford, Michael;  Cressey, Elizabeth;  Courtney-Mustaphi, Colin;  De Vleeschouwer, Francois;  de Jong, Rixt;  Fialkiewicz-Koziel, Barbara;  Finkelstein, Sarah A.;  Garneau, Michelle;  Githumbi, Esther;  Hribjlan, John;  Holmquist, James;  Hughes, Paul D. M.;  Jones, Chris;  Jones, Miriam C.;  Karofeld, Edgar;  Klein, Eric S.;  Kokfelt, Ulla;  Korhola, Atte;  Lacourse, Terri;  Le Roux, Gael;  Lamentowicz, Mariusz;  Large, David;  Lavoie, Martin;  Loisel, Julie;  Mackay, Helen;  MacDonald, Glen M.;  Makila, Markku;  Magnan, Gabriel;  Marchant, Robert;  Marcisz, Katarzyna;  Martinez Cortizas, Antonio;  Massa, Charly;  Mathijssen, Paul;  Mauquoy, Dmitri;  Mighall, Timothy;  Mitchell, Fraser J. G.;  Moss, Patrick;  Nichols, Jonathan;  Oksanen, Pirita O.;  Orme, Lisa;  Packalen, Maara S.;  Robinson, Stephen;  Roland, Thomas P.;  Sanderson, Nicole K.;  Sannel, A. Britta K.;  Silva-Sanchez, Noemi;  Steinberg, Natascha;  Swindles, Graeme T.;  Turner, T. Edward;  Uglow, Joanna;  Valiranta, Minna;  van Bellen, Simon;  van der Linden, Marjolein;  van Geel, Bas;  Wang, Guoping;  Yu, Zicheng;  Zaragoza-Castells, Joana;  Zhao, Yan
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A global analysis of terrestrial plant litter dynamics in non-perennial waterways (vol 11, pg 497, 2018) 期刊论文
NATURE GEOSCIENCE, 2018, 11 (7) : 542-542
作者:  Datry, T.;  Foulquier, A.;  Corti, R.;  von Schiller, D.;  Tockner, K.;  Mendoza-Lera, C.;  Clement, J. C.;  Gessner, M. O.;  Moleon, M.;  Stubbington, R.;  Gucker, B.;  Albarino, R.;  Allen, D. C.;  Altermatt, F.;  Arce, M. I.;  Arnon, S.;  Banas, D.;  Banegas-Medina, A.;  Beller, E.;  Blanchette, M. L.;  Blanco-Libreros, J. F.;  Blessing, J. J.;  Boechat, I. G.;  Boersma, K. S.;  Bogan, M. T.;  Bonada, N.;  Bond, N. R.;  Barria, K. C. Brintrup;  Bruder, A.;  Burrows, R. M.;  Cancellario, T.;  Canhoto, C.;  Carlson, S. M.;  Cauvy-Fraunie, S.;  Cid, N.;  Danger, M.;  Terra, Bianca de Freitas;  De Girolamo, A. M.;  De La Barra, Evans;  Del Campo, R.;  Diaz-Villanueva, V. D.;  Dyer, F.;  Elosegi, A.;  Faye, E.;  Febria, C.;  Four, B.;  Gafny, S.;  Ghate, S. D.;  Gomez, R.;  Gomez-Gener, L.;  Graca, M. A. S.;  Guareschi, S.;  Hoppeler, F.;  Hwan, J. L.;  Jones, J. I.;  Kubheka, S.;  Laini, A.;  Langhans, S. D.;  Leigh, C.;  Little, C. J.;  Lorenz, S.;  Marshall, J. C.;  Martin, E.;  McIntosh, A. R.;  Meyer, E. I.;  Milisa, M.;  Mlambo, M. C.;  Morais, M.;  Moya, N.;  Negus, P. M.;  Niyogi, D. K.;  Papatheodoulou, A.;  Pardo, I.;  Paril, P.;  Pauls, S. U.;  Pesic, V.;  Polasek, M.;  Robinson, C. T.;  Rodriguez-Lozano, P.;  Rolls, R. J.;  Sanchez-Montoya, M. M.;  Savic, A.;  Shumilova, O.;  Sridhar, K. R.;  Steward, A. L.;  Storey, R.;  Taleb, A.;  Uzan, A.;  Vorste, Ross Vander;  Waltham, N. J.;  Woelfle-Erskine, C.;  Zak, D.;  Zarfl, C.;  Zoppini, A.
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A global analysis of terrestrial plant litter dynamics in non-perennial waterways 期刊论文
NATURE GEOSCIENCE, 2018, 11 (7) : 497-+
作者:  Datry, T.;  Foulquier, A.;  Corti, R.;  von Schiller, D.;  Tockner, K.;  Mendoza-Lera, C.;  Clement, J. C.;  Gessner, M. O.;  Moleon, M.;  Stubbington, R.;  Gucker, B.;  Albarino, R.;  Allen, D. C.;  Altermatt, F.;  Arce, M., I;  Arnon, S.;  Banas, D.;  Banegas-Medina, A.;  Beller, E.;  Blanchette, M. L.;  Blanco-Libreros, J. F.;  Blessing, J. J.;  Boechat, I. G.;  Boersma, K. S.;  Bogan, M. T.;  Bonada, N.;  Bond, N. R.;  Brintrup Barria, K. C.;  Bruder, A.;  Burrows, R. M.;  Cancellario, T.;  Canhoto, C.;  Carlson, S. M.;  Cauvy-Fraunie, S.;  Cid, N.;  Danger, M.;  Terra, Bianca de Freitas;  De Girolamo, A. M.;  de La Barra, Evans;  del Campo, R.;  Diaz-Villanueva, V. D.;  Dyer, F.;  Elosegi, A.;  Faye, E.;  Febria, C.;  Four, B.;  Gafny, S.;  Ghate, S. D.;  Gomez, R.;  Gomez-Gener, L.;  Graca, M. A. S.;  Guareschi, S.;  Hoppeler, F.;  Hwan, J. L.;  Jones, J., I;  Kubheka, S.;  Laini, A.;  Langhans, S. D.;  Leigh, C.;  Little, C. J.;  Lorenz, S.;  Marshall, J. C.;  Martin, E.;  McIntosh, A. R.;  Meyer, E., I;  Milisa, M.;  Mlambo, M. C.;  Morais, M.;  Moya, N.;  Negus, P. M.;  Niyogi, D. K.;  Papatheodoulou, A.;  Pardo, I;  Paril, P.;  Pauls, S. U.;  Pesic, V;  Polasek, M.;  Robinson, C. T.;  Rodriguez-Lozano, P.;  Rolls, R. J.;  Sanchez-Montoya, M. M.;  Savic, A.;  Shumilova, O.;  Sridhar, K. R.;  Steward, A. L.;  Storey, R.;  Taleb, A.;  Uzan, A.;  Vander Vorste, Ross;  Waltham, N. J.;  Woelfle-Erskine, C.;  Zak, D.;  Zarfl, C.;  Zoppini, A.
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Speeding up crystallization 期刊论文
SCIENCE, 2017, 358 (6369) : 1386-1386
作者:  Akola, J.;  Jones, R. O.
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Gap assessment in current soil monitoring networks across Europe for measuring soil functions 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2017, 12 (12)
作者:  van Leeuwen, J. P.;  Saby, N. P. A.;  Jones, A.;  Louwagie, G.;  Micheli, E.;  Rutgers, M.;  Schulte, R. P. O.;  Spiegel, H.;  Toth, G.;  Creamer, R. E.
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soil functions  soil monitoring networks  soil attributes  Europe  
A global synthesis of the effects of diversified farming systems on arthropod diversity within fields and across agricultural landscapes 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (11)
作者:  Lichtenberg, Elinor M.;  Kennedy, Christina M.;  Kremen, Claire;  Batary, Peter;  Berendse, Frank;  Bommarco, Riccardo;  Bosque-Perez, Nilsa A.;  Carvalheiro, Luisa G.;  Snyder, William E.;  Williams, Neal M.;  Winfree, Rachael;  Klatt, Bjoern K.;  Astrom, Sandra;  Benjamin, Faye;  Brittain, Claire;  Chaplin-Kramer, Rebecca;  Clough, Yann;  Danforth, Bryan;  Diekoetter, Tim;  Eigenbrode, Sanford D.;  Ekroos, Johan;  Elle, Elizabeth;  Freitas, Breno M.;  Fukuda, Yuki;  Gaines-Day, Hannah R.;  Grab, Heather;  Gratton, Claudio;  Holzschuh, Andrea;  Isaacs, Rufus;  Isaia, Marco;  Jha, Shalene;  Jonason, Dennis;  Jones, Vincent P.;  Klein, Alexandra-Maria;  Krauss, Jochen;  Letourneau, Deborah K.;  Macfadyen, Sarina;  Mallinger, Rachel E.;  Martin, Emily A.;  Martinez, Eliana;  Memmott, Jane;  Morandin, Lora;  Neame, Lisa;  Otieno, Mark;  Park, Mia G.;  Pfiffner, Lukas;  Pocock, Michael J. O.;  Ponce, Carlos;  Potts, Simon G.;  Poveda, Katja;  Ramos, Mariangie;  Rosenheim, Jay A.;  Rundlof, Maj;  Sardinas, Hillary;  Saunders, Manu E.;  Schon, Nicole L.;  Sciligo, Amber R.;  Sidhu, C. Sheena;  Steffan-Dewenter, Ingolf;  Tscharntke, Teja;  Vesely, Milan;  Weisser, Wolfgang W.;  Wilson, Julianna K.;  Crowder, David W.
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agricultural management schemes  arthropod diversity  biodiversity  evenness  functional groups  landscape complexity  meta-analysis  organic farming  plant diversity