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Global CO2 emissions from dry inland waters share common drivers across ecosystems 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Keller, P. S.;  Catalan, N.;  von Schiller, D.;  Grossart, H-P;  Koschorreck, M.;  Obrador, B.;  Frassl, M. A.;  Karakaya, N.;  Barros, N.;  Howitt, J. A.;  Mendoza-Lera, C.;  Pastor, A.;  Flaim, G.;  Aben, R.;  Riis, T.;  Arce, M., I;  Onandia, G.;  Paranaiba, J. R.;  Linkhorst, A.;  del Campo, R.;  Amado, A. M.;  Cauvy-Fraunie, S.;  Brothers, S.;  Condon, J.;  Mendonca, R. F.;  Reverey, F.;  Room, E-, I;  Datry, T.;  Roland, F.;  Laas, A.;  Obertegger, U.;  Park, J-H;  Wang, H.;  Kosten, S.;  Gomez, R.;  Feijoo, C.;  Elosegi, A.;  Sanchez-Montoya, M. M.;  Finlayson, C. M.;  Melita, M.;  Oliveira Junior, E. S.;  Muniz, C. C.;  Gomez-Gener, L.;  Leigh, C.;  Zhang, Q.;  Marce, R.
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/13
The fate of carbon in a mature forest under carbon dioxide enrichment 期刊论文
NATURE, 2020, 580 (7802) : 227-+
作者:  Sun, P. Z.;  Yang, Q.;  Kuang, W. J.;  Stebunov, Y. V.;  Xiong, W. Q.;  Yu, J.;  Nair, R. R.;  Katsnelson, M. I.;  Yuan, S. J.;  Grigorieva, I. V.;  Lozada-Hidalgo, M.;  Wang, F. C.;  Geim, A. K.
收藏  |  浏览/下载:70/0  |  提交时间:2020/05/13

Carbon dioxide enrichment of a mature forest resulted in the emission of the excess carbon back into the atmosphere via enhanced ecosystem respiration, suggesting that mature forests may be limited in their capacity to mitigate climate change.


Atmospheric carbon dioxide enrichment (eCO(2)) can enhance plant carbon uptake and growth(1-5), thereby providing an important negative feedback to climate change by slowing the rate of increase of the atmospheric CO2 concentration(6). Although evidence gathered from young aggrading forests has generally indicated a strong CO2 fertilization effect on biomass growth(3-5), it is unclear whether mature forests respond to eCO(2) in a similar way. In mature trees and forest stands(7-10), photosynthetic uptake has been found to increase under eCO(2) without any apparent accompanying growth response, leaving the fate of additional carbon fixed under eCO(2) unclear(4,5,7-11). Here using data from the first ecosystem-scale Free-Air CO2 Enrichment (FACE) experiment in a mature forest, we constructed a comprehensive ecosystem carbon budget to track the fate of carbon as the forest responded to four years of eCO(2) exposure. We show that, although the eCO(2) treatment of +150 parts per million (+38 per cent) above ambient levels induced a 12 per cent (+247 grams of carbon per square metre per year) increase in carbon uptake through gross primary production, this additional carbon uptake did not lead to increased carbon sequestration at the ecosystem level. Instead, the majority of the extra carbon was emitted back into the atmosphere via several respiratory fluxes, with increased soil respiration alone accounting for half of the total uptake surplus. Our results call into question the predominant thinking that the capacity of forests to act as carbon sinks will be generally enhanced under eCO(2), and challenge the efficacy of climate mitigation strategies that rely on ubiquitous CO2 fertilization as a driver of increased carbon sinks in global forests.


  
Environmental reservoir dynamics predict global infection patterns and population impacts for the fungal disease white-nose syndrome 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (13) : 7255-7262
作者:  Hoyt, Joseph R.;  Langwig, Kate E.;  Sun, Keping;  Parise, Katy L.;  Li, Aoqiang;  Wang, Yujuan;  Huang, Xiaobin;  Worledge, Lisa;  Miller, Helen;  White, J. Paul;  Kaarakka, Heather M.;  Redell, Jennifer A.;  Gorfol, Tamas;  Boldogh, Sandor Andras;  Fukui, Dai;  Sakuyama, Muneki;  Yachimori, Syuuji;  Sato, Akiyoshi;  Dalannast, Munkhnast;  Jargalsaikhan, Ariunbold;  Batbayar, Nyambayar;  Yovel, Yossi;  Amichai, Eran;  Natradze, Ioseb;  Frick, Winifred F.;  Foster, Jeffrey T.;  Feng, Jiang;  Kilpatrick, A. Marm
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/13
environmental pathogen reservoir  global disease dynamics  white-nose syndrome  Pseudogymnoascus destructans  
Action of a minimal contractile bactericidal nanomachine 期刊论文
NATURE, 2020, 580 (7805) : 658-+
作者:  Peng, Ruchao;  Xu, Xin;  Jing, Jiamei;  Wang, Min;  Peng, Qi;  Liu, Sheng;  Wu, Ying;  Bao, Xichen;  Wang, Peiyi;  Qi, Jianxun;  Gao, George F.;  Shi, Yi
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

The authors report near-atomic resolution structures of the R-type bacteriocin from Pseudomonas aeruginosa in the pre-contraction and post-contraction states, and these structures provide insight into the mechanism of action of molecular syringes.


R-type bacteriocins are minimal contractile nanomachines that hold promise as precision antibiotics(1-4). Each bactericidal complex uses a collar to bridge a hollow tube with a contractile sheath loaded in a metastable state by a baseplate scaffold(1,2). Fine-tuning of such nucleic acid-free protein machines for precision medicine calls for an atomic description of the entire complex and contraction mechanism, which is not available from baseplate structures of the (DNA-containing) T4 bacteriophage(5). Here we report the atomic model of the complete R2 pyocin in its pre-contraction and post-contraction states, each containing 384 subunits of 11 unique atomic models of 10 gene products. Comparison of these structures suggests the following sequence of events during pyocin contraction: tail fibres trigger lateral dissociation of baseplate triplexes  the dissociation then initiates a cascade of events leading to sheath contraction  and this contraction converts chemical energy into mechanical force to drive the iron-tipped tube across the bacterial cell surface, killing the bacterium.


  
Intracontinental deformation within the India-Eurasia oblique convergence zone: Case studies on the Nantinghe and Dayingjiang faults 期刊论文
GEOLOGICAL SOCIETY OF AMERICA BULLETIN, 2020, 132 (3-4) : 850-862
作者:  Wang, Yang;  Wang, Yuejun;  Zhang, Peizhen;  Schoenbohm, Lindsay M.;  Zhang, Bo;  Zhang, Jinjiang;  Zhou, Renjie;  Stockli, Daniel F.;  Seagren, Erin G.;  Wang, Fei;  Lin, Wu
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
Anthropogenically-driven increases in the risks of summertime compound hot extremes 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Wang, Jun;  Chen, Yang;  Tett, Simon F. B.;  Yan, Zhongwei;  Zhai, Panmao;  Feng, Jinming;  Xia, Jiangjiang
收藏  |  浏览/下载:7/0  |  提交时间:2020/05/13
Thiolated arsenic species observed in rice paddy pore waters 期刊论文
NATURE GEOSCIENCE, 2020, 13 (4) : 282-+
作者:  Wang, Jiajia;  Kerl, Carolin F.;  Hu, Pengjie;  Martin, Maria;  Mu, Tingting;  Brueggenwirth, Lena;  Wu, Guangmei;  Said-Pullicino, Daniel;  Romani, Marco;  Wu, Longhua;  Planer-Friedrich, Britta
收藏  |  浏览/下载:5/0  |  提交时间:2020/05/13
Dust Constraints from joint Observational-Modelling-experiMental analysis (DustCOMM): comparison with measurements and model simulations 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (2) : 829-863
作者:  Adebiyi, Adeyemi A.;  Kok, Jasper F.;  Wang, Yang;  Ito, Akinori;  Ridley, David A.;  Nabat, Pierre;  Zhao, Chun
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.


  
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids 期刊论文
NATURE, 2020
作者:  Nixon, Christopher C.;  Mavigner, Maud;  Sampey, Gavin C.;  Brooks, Alyssa D.;  Spagnuolo, Rae Ann;  Irlbeck, David M.;  Mattingly, Cameron;  Ho, Phong T.;  Schoof, Nils;  Cammon, Corinne G.;  Tharp, Greg K.;  Kanke, Matthew;  Wang, Zhang;  Cleary, Rachel A.;  Upadhyay, Amit A.;  De, Chandrav;  Wills, Saintedym R.;  Falcinelli, Shane D.;  Galardi, Cristin;  Walum, Hasse;  Schramm, Nathaniel J.;  Deutsch, Jennifer;  Lifson, Jeffrey D.;  Fennessey, Christine M.;  Keele, Brandon F.;  Jean, Sherrie;  Maguire, Sean;  Liao, Baolin;  Browne, Edward P.;  Ferris, Robert G.;  Brehm, Jessica H.;  Favre, David;  Vanderford, Thomas H.;  Bosinger, Steven E.;  Jones, Corbin D.;  Routy, Jean-Pierre;  Archin, Nancie M.;  Margolis, David M.;  Wahl, Angela;  Dunham, Richard M.;  Silvestri, Guido;  Chahroudi, Ann;  Garcia, J. Victor
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

Single-cell RNA sequencing and spatial transcriptomics reveal that the somitogenesis clock is active in mouse gastruloids, which can be induced to generate somites with the correct rostral-caudal patterning.


Gastruloids are three-dimensional aggregates of embryonic stem cells that display key features of mammalian development after implantation, including germ-layer specification and axial organization(1-3). To date, the expression pattern of only a small number of genes in gastruloids has been explored with microscopy, and the extent to which genome-wide expression patterns in gastruloids mimic those in embryos is unclear. Here we compare mouse gastruloids with mouse embryos using single-cell RNA sequencing and spatial transcriptomics. We identify various embryonic cell types that were not previously known to be present in gastruloids, and show that key regulators of somitogenesis are expressed similarly between embryos and gastruloids. Using live imaging, we show that the somitogenesis clock is active in gastruloids and has dynamics that resemble those in vivo. Because gastruloids can be grown in large quantities, we performed a small screen that revealed how reduced FGF signalling induces a short-tail phenotype in embryos. Finally, we demonstrate that embedding in Matrigel induces gastruloids to generate somites with the correct rostral-caudal patterning, which appear sequentially in an anterior-to-posterior direction over time. This study thus shows the power of gastruloids as a model system for exploring development and somitogenesis in vitro in a high-throughput manner.