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Pareto optimality and compromise for environmental water management 期刊论文
Water Resources Research, 2021
作者:  Sarah E. Null;  Marcelo A. Olivares;  Felipe Cordera;  Jay R. Lund
收藏  |  浏览/下载:11/0  |  提交时间:2021/10/22
Quantifying impacts of plastic debris on marine wildlife identifies ecological breakpoints 期刊论文
Ecology Letters, 2020
作者:  Nina Marn;  Marko Jusup;  Sebastiaan A. L. M. Kooijman;  Tin Klanjscek
收藏  |  浏览/下载:5/0  |  提交时间:2020/08/18
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes 期刊论文
NATURE, 2020, 578 (7793) : 102-+
作者:  Clark, Timothy D.;  Raby, Graham D.;  Roche, Dominique G.;  Binning, Sandra A.;  Speers-Roesch, Ben;  Jutfelt, Fredrik;  Sundin, Josefin
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The discovery of drivers of cancer has traditionally focused on protein-coding genes(1-4). Here we present analyses of driver point mutations and structural variants in non-coding regions across 2,658 genomes from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium(5) of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). For point mutations, we developed a statistically rigorous strategy for combining significance levels from multiple methods of driver discovery that overcomes the limitations of individual methods. For structural variants, we present two methods of driver discovery, and identify regions that are significantly affected by recurrent breakpoints and recurrent somatic juxtapositions. Our analyses confirm previously reported drivers(6,7), raise doubts about others and identify novel candidates, including point mutations in the 5'  region of TP53, in the 3'  untranslated regions of NFKBIZ and TOB1, focal deletions in BRD4 and rearrangements in the loci of AKR1C genes. We show that although point mutations and structural variants that drive cancer are less frequent in non-coding genes and regulatory sequences than in protein-coding genes, additional examples of these drivers will be found as more cancer genomes become available.


  
Age and connection to nature: when is engagement critical? 期刊论文
FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, 2019, 17 (5) : 265-269
作者:  Hughes, Joelene;  Rogerson, Mike;  Barton, Jo;  Bragg, Rachel
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/26
Factors influencing meiotic recombination revealed by whole-genome sequencing of single sperm 期刊论文
SCIENCE, 2019, 363 (6433) : 1300-+
作者:  Hinch, Anjali Gupta;  Zhang, Gang;  Becker, Philipp W.;  Moralli, Daniela;  Hinch, Robert;  Davies, Benjamin;  Bowden, Rory;  Donnelly, Peter
收藏  |  浏览/下载:1/0  |  提交时间:2019/11/27