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Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system 期刊论文
NATURE, 2020, 577 (7789) : 271-+
作者:  Halpin-Healy, Tyler S.;  Klompe, Sanne E.;  Sternberg, Samuel H.;  Fernandez, Israel S.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

Bacteria use adaptive immune systems encoded by CRISPR and Cas genes to maintain genomic integrity when challenged by pathogens and mobile genetic elements(1-3). Type I CRISPR-Cas systems typically target foreign DNA for degradation via joint action of the ribonucleoprotein complex Cascade and the helicase-nuclease Cas3(4,5), but nuclease-deficient type I systems lacking Cas3 have been repurposed for RNA-guided transposition by bacterial Tn7-like transposons(6,7). How CRISPR- and transposon-associated machineries collaborate during DNA targeting and insertion remains unknown. Here we describe structures of a TniQ-Cascade complex encoded by the Vibrio cholerae Tn6677 transposon using cryo-electron microscopy, revealing the mechanistic basis of this functional coupling. The cryo-electron microscopy maps enabled de novo modelling and refinement of the transposition protein TniQ, which binds to the Cascade complex as a dimer in a head-to-tail configuration, at the interface formed by Cas6 and Cas7 near the 3'  end of the CRISPR RNA (crRNA). The natural Cas8-Cas5 fusion protein binds the 5'  crRNA handle and contacts the TniQ dimer via a flexible insertion domain. A target DNA-bound structure reveals critical interactions necessary for protospacer-adjacent motif recognition and R-loop formation. This work lays the foundation for a structural understanding of how DNA targeting by TniQ-Cascade leads to downstream recruitment of additional transposase proteins, and will guide protein engineering efforts to leverage this system for programmable DNA insertions in genome-engineering applications.


  
Molecular composition and photochemical evolution of water-soluble organic carbon (WSOC) extracted from field biomass burning aerosols using high-resolution mass spectrometry 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (10) : 6115-6128
作者:  Cai, Jing;  39;an
收藏  |  浏览/下载:7/0  |  提交时间:2020/06/01
Insights into atmospheric oxidation processes by performing factor analyses on subranges of mass spectra 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (10) : 5945-5961
作者:  Zhang, Yanjun;  Perakyla, Otso;  Yan, Chao;  Heikkinen, Liine;  Aijala, Mikko;  Daellenbach, Kaspar R.;  Zha, Qiaozhi;  Riva, Matthieu;  Garmash, Olga;  Junninen, Heikki;  Paatero, Pentti;  Worsnop, Douglas;  Ehn, Mikael
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/20
The effect of hydrophobic glassy organic material on the cloud condensation nuclei activity of particles with different morphologies 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (5) : 3325-3339
作者:  Tandon, Ankit;  Rothfuss, Nicholas E.;  Petters, Markus D.
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
Nitrogen-containing secondary organic aerosol formation by acrolein reaction with ammonia/ammonium 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (2) : 1343-1356
作者:  Li, Zhijian;  Nizkorodov, Sergey A.;  Chen, Hong;  Lu, Xiaohui;  Yang, Xin;  Chen, Jianmin
收藏  |  浏览/下载:12/0  |  提交时间:2019/04/09
Quantitative constraints on autoxidation and dimer formation from direct probing of monoterpene-derived peroxy radical chemistry 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (48) : 12142-12147
作者:  Zhao, Yue;  Thornton, Joel A.;  Pye, Havala O. T.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
monoterpenes  peroxy radicals  autoxidation  dimers  particle formation  
Semi-volatile and highly oxygenated gaseous and particulate organic compounds observed above a boreal forest canopy 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (15) : 11547-11562
作者:  Lee, Ben H.;  39;Ambro, Emma L.
收藏  |  浏览/下载:0/0  |  提交时间:2019/04/09
Synergistic O-3 + OH oxidation pathway to extremely low-volatility dimers revealed in beta-pinene secondary organic aerosol 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (33) : 8301-8306
作者:  Kenseth, Christopher M.;  Huang, Yuanlong;  Zhao, Ran;  Dalleska, Nathan F.;  Hethcox, Caleb;  Stoltz, Brian M.;  Seinfeld, John H.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
secondary organic aerosol  synergistic oxidation  atmospheric accretion chemistry  dimer formation  monoterpenes  
Characterization of organic nitrate constituents of secondary organic aerosol (SOA) from nitrate-radical-initiated oxidation of limonene using high-resolution chemical ionization mass spectrometry 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (8) : 5467-5481
作者:  Faxon, Cameron;  Hammes, Julia;  Le Breton, Michael;  Pathak, Ravi Kant;  Hallquist, Mattias
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09