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A plant genetic network for preventing dysbiosis in the phyllosphere 期刊论文
NATURE, 2020, 580 (7805) : 653-+
作者:  van den Brink, Susanne C.;  Alemany, Anna;  van Batenburg, Vincent;  Moris, Naomi;  Blotenburg, Marloes;  Vivie, Judith;  Baillie-Johnson, Peter;  Nichols, Jennifer;  Sonnen, Katharina F.;  Martinez Arias, Alfonso;  van Oudenaarden, Alexander
收藏  |  浏览/下载:59/0  |  提交时间:2020/07/03

Mutations in genes involved in immune signalling and vesicle trafficking cause defects in the leaf microbiome of Arabidopsis thaliana that result in damage to leaf tissues, suggesting mechanisms by which terrestrial plants control the level and diversity of endophytic phyllosphere microbiota.


The aboveground parts of terrestrial plants, collectively called the phyllosphere, have a key role in the global balance of atmospheric carbon dioxide and oxygen. The phyllosphere represents one of the most abundant habitats for microbiota colonization. Whether and how plants control phyllosphere microbiota to ensure plant health is not well understood. Here we show that the Arabidopsis quadruple mutant (min7 fls2 efr cerk1  hereafter, mfec)(1), simultaneously defective in pattern-triggered immunity and the MIN7 vesicle-trafficking pathway, or a constitutively activated cell death1 (cad1) mutant, carrying a S205F mutation in a membrane-attack-complex/perforin (MACPF)-domain protein, harbour altered endophytic phyllosphere microbiota and display leaf-tissue damage associated with dysbiosis. The Shannon diversity index and the relative abundance of Firmicutes were markedly reduced, whereas Proteobacteria were enriched in the mfec and cad1(S205F) mutants, bearing cross-kingdom resemblance to some aspects of the dysbiosis that occurs in human inflammatory bowel disease. Bacterial community transplantation experiments demonstrated a causal role of a properly assembled leaf bacterial community in phyllosphere health. Pattern-triggered immune signalling, MIN7 and CAD1 are found in major land plant lineages and are probably key components of a genetic network through which terrestrial plants control the level and nurture the diversity of endophytic phyllosphere microbiota for survival and health in a microorganism-rich environment.


  
Olfactory receptor and circuit evolution promote host specialization 期刊论文
NATURE, 2020
作者:  Chen, Tse-An;  Chuu, Chih-Piao;  Tseng, Chien-Chih;  Wen, Chao-Kai;  Wong, H. -S. Philip;  Pan, Shuangyuan;  Li, Rongtan;  Chao, Tzu-Ang;  Chueh, Wei-Chen;  Zhang, Yanfeng;  Fu, Qiang;  Yakobson, Boris I.;  Chang, Wen-Hao;  Li, Lain-Jong
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

The evolution of animal behaviour is poorly understood(1,2). Despite numerous correlations between interspecific divergence in behaviour and nervous system structure and function, demonstrations of the genetic basis of these behavioural differences remain rare(3-5). Here we develop a neurogenetic model, Drosophila sechellia, a species that displays marked differences in behaviour compared to its close cousin Drosophila melanogaster(6,7), which are linked to its extreme specialization on noni fruit (Morinda citrifolia)(8-16). Using calcium imaging, we identify olfactory pathways in D. sechellia that detect volatiles emitted by the noni host. Our mutational analysis indicates roles for different olfactory receptors in long- and short-range attraction to noni, and our cross-species allele-transfer experiments demonstrate that the tuning of one of these receptors is important for species-specific host-seeking. We identify the molecular determinants of this functional change, and characterize their evolutionary origin and behavioural importance. We perform circuit tracing in the D. sechellia brain, and find that receptor adaptations are accompanied by increased sensory pooling onto interneurons as well as species-specific central projection patterns. This work reveals an accumulation of molecular, physiological and anatomical traits that are linked to behavioural divergence between species, and defines a model for investigating speciation and the evolution of the nervous system.


A neurogenetic model, Drosophila sechellia-a relative of Drosophila melanogaster that has developed an extreme specialization for a single host plant-sheds light on the evolution of interspecific differences in behaviour.


  
Soil fauna diversity increases CO2 but suppresses N2O emissions from soil 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Lubbers, Ingrid M.;  Berg, Matty P.;  De Deyn, Gerlinde B.;  van der Putten, Wim H.;  van Groenigen, Jan Willem
收藏  |  浏览/下载:15/0  |  提交时间:2019/11/27
community composition  functional dissimilarity  GHG mitigation  net diversity effect  soil-derived GHG emission  species richness  
Carbon for nutrient exchange between arbuscular mycorrhizal fungi and wheat varies according to cultivar and changes in atmospheric carbon dioxide concentration 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Thirkell, Tom J.;  Pastok, Daria;  Field, Katie J.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
arbuscular mycorrhizal fungi  carbon  climate change  CO2  nitrogen  phosphorus  sustainable agriculture  wheat  
Biogeographic variation in temperature sensitivity of decomposition in forest soils 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Li, Jinquan;  Nie, Ming;  Pendall, Elise;  Reich, Peter B.;  Pei, Junmin;  Noh, Nam Jin;  Zhu, Ting;  Li, Bo;  Fang, Changming
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
carbon cycle  carbon cycle modelling  carbon decomposition  climate change  forest  Q(10)  spatial heterogeneity  temperature sensitivity  
Natural hazard threats to pollinators and pollination 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Nicholson, Charlie C.;  Egan, Paul A.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
disturbance  ecosystem service  extreme event  extreme weather  natural hazard  pollination  resilience  vulnerability  
Multiple trade-offs regulate the effects of woody plant removal on biodiversity and ecosystem functions in global rangelands 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Ding, Jingyi;  Travers, Samantha K.;  Delgado-Baquerizo, Manuel;  Eldridge, David J.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
encroachment  global synthesis  meta-analysis  rangeland management  removal method  shrub removal  thickening  woody plant traits  
Differential soil fungus accumulation and density dependence of trees in a subtropical forest 期刊论文
SCIENCE, 2019, 366 (6461) : 124-+
作者:  Chen, Lei;  Swenson, Nathan G.;  Ji, Niuniu;  Mi, Xiangcheng;  Ren, Haibao;  Guo, Liangdong;  Ma, Keping
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Climate and plant trait strategies determine tree carbon allocation to leaves and mediate future forest productivity 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (10) : 3395-3405
作者:  Trugman, Anna T.;  Anderegg, Leander D. L.;  Wolfe, Brett T.;  Birami, Benjamin;  Ruehr, Nadine K.;  Detto, Matteo;  Bartlete, Megan K.;  Anderegg, William R. L.
收藏  |  浏览/下载:18/0  |  提交时间:2019/11/27
aridity gradient  carbon allocation  climate change  CO2 fertilization  leaf area  plant hydraulic traits  sapwood area  vegetation model  
Grazing simplifies soil micro-food webs and decouples their relationships with ecosystem functions in grasslands 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Wang, Bing;  Wu, Liji;  Chen, Dima;  Wu, Ying;  Hu, Shuijin;  Li, Linghao;  Bai, Yongfei
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
functional groups  livestock grazing  Mongolian Plateau  soil carbon mineralization  soil environment  soil nitrogen mineralization  soil substrates  trophic levels