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Video-based AI for beat-to-beat assessment of cardiac function 期刊论文
NATURE, 2020, 580 (7802) : 252-+
作者:  Pleguezuelos-Manzano, Cayetano;  Puschhof, Jens;  Huber, Axel Rosendahl;  van Hoeck, Arne;  Wood, Henry M.;  Nomburg, Jason;  Gurjao, Carino;  Manders, Freek;  Dalmasso, Guillaume;  Stege, Paul B.;  Paganelli, Fernanda L.;  Geurts, Maarten H.;  Beumer, Joep;  Mizutani, Tomohiro;  Miao, Yi;  van der Linden, Reinier;  van der Elst, Stefan;  Garcia, K. Christopher;  Top, Janetta;  Willems, Rob J. L.;  Giannakis, Marios;  Bonnet, Richard;  Quirke, Phil;  Meyerson, Matthew;  Cuppen, Edwin;  van Boxtel, Ruben;  Clevers, Hans
收藏  |  浏览/下载:117/0  |  提交时间:2020/07/03

A video-based deep learning algorithm-EchoNet-Dynamic-accurately identifies subtle changes in ejection fraction and classifies heart failure with reduced ejection fraction using information from multiple cardiac cycles.


Accurate assessment of cardiac function is crucial for the diagnosis of cardiovascular disease(1), screening for cardiotoxicity(2) and decisions regarding the clinical management of patients with a critical illness(3). However, human assessment of cardiac function focuses on a limited sampling of cardiac cycles and has considerable inter-observer variability despite years of training(4,5). Here, to overcome this challenge, we present a video-based deep learning algorithm-EchoNet-Dynamic-that surpasses the performance of human experts in the critical tasks of segmenting the left ventricle, estimating ejection fraction and assessing cardiomyopathy. Trained on echocardiogram videos, our model accurately segments the left ventricle with a Dice similarity coefficient of 0.92, predicts ejection fraction with a mean absolute error of 4.1% and reliably classifies heart failure with reduced ejection fraction (area under the curve of 0.97). In an external dataset from another healthcare system, EchoNet-Dynamic predicts the ejection fraction with a mean absolute error of 6.0% and classifies heart failure with reduced ejection fraction with an area under the curve of 0.96. Prospective evaluation with repeated human measurements confirms that the model has variance that is comparable to or less than that of human experts. By leveraging information across multiple cardiac cycles, our model can rapidly identify subtle changes in ejection fraction, is more reproducible than human evaluation and lays the foundation for precise diagnosis of cardiovascular disease in real time. As a resource to promote further innovation, we also make publicly available a large dataset of 10,030 annotated echocardiogram videos.


  
Habitat compression and ecosystem shifts as potential links between marine heatwave and record whale entanglements 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Santora, Jarrod A.;  Mantua, Nathan J.;  Schroeder, Isaac D.;  Field, John C.;  Hazen, Elliott L.;  Bograd, Steven J.;  Sydeman, William J.;  Wells, Brian K.;  Calambokidis, John;  Saez, Lauren;  Lawson, Dan;  Forney, Karin A.
收藏  |  浏览/下载:8/0  |  提交时间:2020/05/13
Vegetation cover-another dominant factor in determining global water resources in forested regions 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (2) : 786-795
作者:  Wei, Xiaohua;  Li, Qiang;  Zhang, Mingfang;  Giles-Hansen, Krysta;  Liu, Wenfei;  Fan, Houbao;  Wang, Yi;  Zhou, Guoyi;  Piao, Shilong;  Liu, Shirong
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
climate change  directional interactions  relative contribution  vegetation cover change  water resources  
Review of the ecosystem service implications of mangrove encroachment into salt marshes 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (10)
作者:  Kelleway, Jeffrey J.;  Cavanaugh, Kyle;  Rogers, Kerrylee;  Feller, Ilka C.;  Ens, Emilie;  Doughty, Cheryl;  Saintilan, Neil
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
blue carbon  climate change  coastal protection  cultural values  habitat function  mangrove expansion  nutrient cycling  salt marsh  sea-level rise  threatened species  
Impaired ecosystem process despite little effects on populations: modeling combined effects of warming and toxicants 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (8)
作者:  Galic, Nika;  Grimm, Volker;  Forbes, Valery E.
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
dynamic energy budgets  ecosystem services  freshwater ecosystems  individual-based model  leaf litter processing  multiple stressors  population dynamics