GSTDTAP  > 资源环境科学
DOI10.1002/2017WR021974
Predicting Hydrologic Function With Aquatic Gene Fragments
Good, S. P.1; URycki, D. R.1; Crump, B. C.2
2018-03-01
发表期刊WATER RESOURCES RESEARCH
ISSN0043-1397
EISSN1944-7973
出版年2018
卷号54期号:3页码:2424-2435
文章类型Article
语种英语
国家USA
英文摘要

Recent advances in microbiology techniques, such as genetic sequencing, allow for rapid and cost-effective collection of large quantities of genetic information carried within water samples. Here we posit that the unique composition of aquatic DNA material within a water sample contains relevant information about hydrologic function at multiple temporal scales. In this study, machine learning was used to develop discharge prediction models trained on the relative abundance of bacterial taxa classified into operational taxonomic units (OTUs) based on 16S rRNA gene sequences from six large arctic rivers. We term this approach "genohydrology," and show that OTU relative abundances can be used to predict river discharge at monthly and longer timescales. Based on a single DNA sample from each river, the average Nash-Sutcliffe efficiency (NSE) for predicted mean monthly discharge values throughout the year was 0.84, while the NSE for predicted discharge values across different return intervals was 0.67. These are considerable improvements over predictions based only on the area-scaled mean specific discharge of five similar rivers, which had average NSE values of 0.64 and -0.32 for seasonal and recurrence interval discharge values, respectively. The genohydrology approach demonstrates that genetic diversity within the aquatic microbiome is a large and underutilized data resource with benefits for prediction of hydrologic function.


英文关键词DNA machine learning support vector regression discharge return interval genohydrology
领域资源环境
收录类别SCI-E
WOS记录号WOS:000430364900054
WOS关键词FRESH-WATER ; BACTERIOPLANKTON ; BIOGEOGRAPHY ; RIVER ; DNA ; SYNCHRONY ; CATCHMENT ; DISCHARGE ; FLOW
WOS类目Environmental Sciences ; Limnology ; Water Resources
WOS研究方向Environmental Sciences & Ecology ; Marine & Freshwater Biology ; Water Resources
引用统计
文献类型期刊论文
条目标识符http://119.78.100.173/C666/handle/2XK7JSWQ/21892
专题资源环境科学
作者单位1.Oregon State Univ, Dept Biol & Ecol Engn, Corvallis, OR 97331 USA;
2.Oregon State Univ, Coll Earth Ocean & Atmospher Sci, Corvallis, OR 97331 USA
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Good, S. P.,URycki, D. R.,Crump, B. C.. Predicting Hydrologic Function With Aquatic Gene Fragments[J]. WATER RESOURCES RESEARCH,2018,54(3):2424-2435.
APA Good, S. P.,URycki, D. R.,&Crump, B. C..(2018).Predicting Hydrologic Function With Aquatic Gene Fragments.WATER RESOURCES RESEARCH,54(3),2424-2435.
MLA Good, S. P.,et al."Predicting Hydrologic Function With Aquatic Gene Fragments".WATER RESOURCES RESEARCH 54.3(2018):2424-2435.
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