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DOI | 10.1038/s41467-018-04162-3 |
Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape | |
Ginno, Paul Adrian1; Burger, Lukas1,2; Seebacher, Jan1; Iesmantavicius, Vytautas1; Schuebeler, Dirk1,3 | |
2018-10-02 | |
发表期刊 | NATURE COMMUNICATIONS
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ISSN | 2041-1723 |
出版年 | 2018 |
卷号 | 9 |
文章类型 | Article |
语种 | 英语 |
国家 | Switzerland |
英文摘要 | Regulation of transcription, replication, and cell division relies on differential protein binding to DNA and chromatin, yet it is unclear which regulatory components remain bound to compacted mitotic chromosomes. By utilizing the buoyant density of DNA-protein complexes after cross-linking, we here develop a mass spectrometry-based approach to quantify the chromatin-associated proteome at separate stages of the cell cycle. While epigenetic modifiers that promote transcription are lost from mitotic chromatin, repressive modifiers generally remain associated. Furthermore, while proteins involved in transcriptional elongation are evicted, most identified transcription factors are retained on mitotic chromatin to varying degrees, including core promoter binding proteins. This predicts conservation of the regulatory landscape on mitotic chromosomes, which we confirm by genome-wide measurements of chromatin accessibility. In summary, this work establishes an approach to study chromatin, provides a comprehensive catalog of chromatin changes during the cell cycle, and reveals the degree to which the genomic regulatory landscape is maintained through mitosis. |
领域 | 资源环境 |
收录类别 | SCI-E |
WOS记录号 | WOS:000446017000016 |
WOS关键词 | TRANSCRIPTION FACTORS ; IN-VIVO ; R PACKAGE ; BOOKMARKING ; ASSOCIATION ; BINDING ; PHOSPHORYLATION ; QUANTIFICATION ; FORMALDEHYDE ; ACTIVATION |
WOS类目 | Multidisciplinary Sciences |
WOS研究方向 | Science & Technology - Other Topics |
URL | 查看原文 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://119.78.100.173/C666/handle/2XK7JSWQ/203809 |
专题 | 资源环境科学 |
作者单位 | 1.Friedrich Miescher Inst Biomed Res, Basel, Switzerland; 2.Swiss Inst Bioinformat, Basel, Switzerland; 3.Univ Basel, Fac Sci, Basel, Switzerland |
推荐引用方式 GB/T 7714 | Ginno, Paul Adrian,Burger, Lukas,Seebacher, Jan,et al. Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape[J]. NATURE COMMUNICATIONS,2018,9. |
APA | Ginno, Paul Adrian,Burger, Lukas,Seebacher, Jan,Iesmantavicius, Vytautas,&Schuebeler, Dirk.(2018).Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape.NATURE COMMUNICATIONS,9. |
MLA | Ginno, Paul Adrian,et al."Cell cycle-resolved chromatin proteomics reveals the extent of mitotic preservation of the genomic regulatory landscape".NATURE COMMUNICATIONS 9(2018). |
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