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DOI10.1038/s41467-018-03561-w
Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with post-mortem adult brains
Hoffman, Gabriel E.1,2; Hartley, Brigham J.3,4; Flaherty, Erin4,5; Ladran, Ian3,4; Gochman, Peter6; Ruderfer, Douglas M.1,2,7,8,9; Stahl, Eli A.1,2; Rapoport, Judith6; Sklar, Pamela1,3,4,5; Brennand, Kristen J.1,2,3,4
2017-12-20
发表期刊NATURE COMMUNICATIONS
ISSN2041-1723
出版年2017
卷号8
文章类型Article
语种英语
国家USA
英文摘要

The power of human induced pluripotent stem cell (hiPSC)-based studies to resolve the smaller effects of common variants within the size of cohorts that can be realistically assembled remains uncertain. We identified and accounted for a variety of technical and biological sources of variation in a large case/control schizophrenia (SZ) hiPSC-derived cohort of neural progenitor cells and neurons. Reducing the stochastic effects of the differentiation process by correcting for cell type composition boosted the SZ signal and increased the concordance with post-mortem data sets. We predict a growing convergence between hiPSC and post-mortem studies as both approaches expand to larger cohort sizes. For studies of complex genetic disorders, to maximize the power of hiPSC cohorts currently feasible, in most cases and whenever possible, we recommend expanding the number of individuals even at the expense of the number of replicate hiPSC clones.


领域资源环境
收录类别SCI-E ; SSCI
WOS记录号WOS:000418566800021
WOS关键词PLURIPOTENT STEM-CELLS ; CHILDHOOD-ONSET SCHIZOPHRENIA ; EPITHELIAL-MESENCHYMAL TRANSITION ; DIFFERENTIAL EXPRESSION ANALYSIS ; HUMAN CORTICAL DEVELOPMENT ; SET ENRICHMENT ANALYSIS ; RNA-SEQ ; NEURAL CREST ; NEUROPSYCHIATRIC DISORDERS ; NEURODEVELOPMENTAL MODEL
WOS类目Multidisciplinary Sciences
WOS研究方向Science & Technology - Other Topics
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文献类型期刊论文
条目标识符http://119.78.100.173/C666/handle/2XK7JSWQ/203747
专题资源环境科学
作者单位1.Icahn Sch Med Mt Sinai, Dept Genet & Genom, New York, NY 10029 USA;
2.Icahn Sch Med Mt Sinai, Icahn Inst Genom & Multiscale Biol, New York, NY 10029 USA;
3.Icahn Sch Med Mt Sinai, Dept Neurosci, New York, NY 10029 USA;
4.Icahn Sch Med Mt Sinai, Friedman Brain Inst, New York, NY 10029 USA;
5.Icahn Sch Med Mt Sinai, Dept Psychiat, New York, NY 10029 USA;
6.NIMH, Childhood Psychiat Branch, NIH, Bethesda, MD 20892 USA;
7.Vanderbilt Univ, Med Ctr, Div Med Genet, Vanderbilt Genet Inst,Dept Med, Nashville, TN 37232 USA;
8.Vanderbilt Univ, Med Ctr, Div Med Genet, Dept Psychiat,Vanderbilt Genet Inst, Nashville, TN 37232 USA;
9.Vanderbilt Univ, Med Ctr, Div Med Genet, Dept Biomed Informat,Vanderbilt Genet Inst, Nashville, TN 37232 USA
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GB/T 7714
Hoffman, Gabriel E.,Hartley, Brigham J.,Flaherty, Erin,et al. Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with post-mortem adult brains[J]. NATURE COMMUNICATIONS,2017,8.
APA Hoffman, Gabriel E..,Hartley, Brigham J..,Flaherty, Erin.,Ladran, Ian.,Gochman, Peter.,...&Brennand, Kristen J..(2017).Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with post-mortem adult brains.NATURE COMMUNICATIONS,8.
MLA Hoffman, Gabriel E.,et al."Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with post-mortem adult brains".NATURE COMMUNICATIONS 8(2017).
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