GSTDTAP  > 地球科学
DOI10.1038/nature20830
Fine-mapping inflammatory bowel disease loci to single-variant resolution
Huang, Hailiang1; 39;Amato, Mauro2
2017-07-13
发表期刊NATURE
ISSN0028-0836
EISSN1476-4687
出版年2017
卷号547期号:7662页码:173-+
文章类型Article
语种英语
国家USA; Belgium; England; Canada; Denmark; Sweden; Spain; Germany; Australia; Scotland; Norway; Japan; Netherlands; South Africa
英文摘要

Inflammatory bowel diseases are chronic gastrointestinal inflammatory disorders that affect millions of people worldwide. Genome-wide association studies have identified 200 inflammatory bowel disease-associated loci, but few have been conclusively resolved to specific functional variants. Here we report fine-mapping of 94 inflammatory bowel disease loci using high-density genotyping in 67,852 individuals. We pinpoint 18 associations to a single causal variant with greater than 95% certainty, and an additional 27 associations to a single variant with greater than 50% certainty. These 45 variants are significantly enriched for protein-coding changes (n = 13), direct disruption of transcription-factor binding sites (n = 3), and tissue-specific epigenetic marks (n = 10), with the last category showing enrichment in specific immune cells among associations stronger in Crohn's disease and in gut mucosa among associations stronger in ulcerative colitis. The results of this study suggest that high-resolution fine-mapping in large samples can convert many discoveries from genome-wide association studies into statistically convincing causal variants, providing a powerful substrate for experimental elucidation of disease mechanisms.


领域地球科学 ; 气候变化 ; 资源环境
收录类别SCI-E
WOS记录号WOS:000405314500030
WOS关键词GENOME-WIDE ASSOCIATION ; SUSCEPTIBILITY LOCI ; GENE-EXPRESSION ; ILLUMINA MICROARRAY ; ULCERATIVE-COLITIS ; COMMON VARIANTS ; CROHNS-DISEASE ; COMPLEX TRAITS ; RARE VARIANTS ; LOW-FREQUENCY
WOS类目Multidisciplinary Sciences
WOS研究方向Science & Technology - Other Topics
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引用统计
被引频次:372[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://119.78.100.173/C666/handle/2XK7JSWQ/202679
专题地球科学
资源环境科学
气候变化
作者单位1.Harvard Med Sch, Massachusetts Gen Hosp, Analyt & Translat Genet Unit, Boston, MA 02114 USA;
2.Broad Inst MIT & Harvard, Cambridge, MA 02141 USA;
3.Univ Liege, Grp Interdisciplinaire Genoproteom Appl GIGA R Re, Unit Med Genom, B-4000 Liege, Belgium;
4.Univ Liege, WELBIO, B-4000 Liege, Belgium;
5.Univ Liege, Fac Vet Med, B-4000 Liege, Belgium;
6.Univ Oxford, Wellcome Trust Ctr Human Genet, Headington OX3 7BN, England;
7.Univ Oxford, Christ Church, St Aldates OX1 1DP, England;
8.Wellcome Trust Sanger Inst, Wellcome Genome Campus, Hinxton CB10 1SA, Cambs, England;
9.Montreal Heart Inst, Res Ctr, Montreal, PQ H1T 1C8, Canada;
10.Hosp Southern Jutland, IRS Ctr Sonderjylland, Focused Res Unit Mol Diagnost & Clin Res MOK, DK-6200 Abenra, Denmark;
11.Univ Southern Denmark, Inst Mol Med, DK-5000 Odense, Denmark;
12.Katholieke Univ Leuven, Dept Human Genet, B-3000 Leuven, Belgium;
13.Univ Oxford, John Radcliffe Hosp, Nuffield Dept Clin Neurosci, Oxford Ctr Neuroinflammat,Div Clin Neurol, Oxford OX3 9DS, England;
14.Karolinska Inst, Dept Med Solna, Clin Epidemiol Unit, S-17176 Stockholm, Sweden;
15.BioDonostia Hlth Res Inst, Dept Gastrointestinal & Liver Dis, San Sebastian 20014, Spain;
16.Basque Fdn Sci, IKERBASQUE, Bilbao 48013, Spain;
17.Illumina, San Diego, CA 92122 USA;
18.Christian Albrechts Univ Kiel, Inst Clin Mol Biol, D-24118 Kiel, Germany;
19.Orebro Univ, Fac Med & Hlth, Dept Gastroenterol, SE-70182 Orebro, Sweden;
20.Cedars Sinai Med Ctr, F Widjaja Fdn Inflammatory Bowel & Immunobiol Res, Los Angeles, CA 90048 USA;
21.Univ Lancaster, Data Sci Inst, Lancaster LA1 4YG, England;
22.Univ Lancaster, Lancaster Med Sch, Lancaster LA1 4YG, England;
23.St John God Hosp, Ctr Inflammatory Bowel Dis, Subiaco, WA 6008, Australia;
24.Univ Western Australia, Sch Med & Pharmacol, Harry Perkins Inst Med Res, Murdoch, WA 6150, Australia;
25.Univ Edinburgh, Western Gen Hosp, Gastrointestinal Unit, Edinburgh, Midlothian, Scotland;
26.CHU Liege, Div Gastroenterol, B-4000 Liege, Belgium;
27.Norwegian Univ Life Sci, Inst Livestock & Aquacultural Sci, N-1430 As, Norway;
28.RIKEN, Ctr Integrat Med Sci, Lab Genotyping Dev, Yokohama, Kanagawa 2300045, Japan;
29.Addenbrookes Hosp, Inflammatory Bowel Dis Res Grp, Cambridge CB2 0QQ, England;
30.Open Targets, Wellcome Trust Genome Campus, Hinxton CB10 1SD, Cambs, England;
31.Univ Groningen, Univ Med Ctr Groningen, Dept Gastroenterol & Hepatol, NL-9700 RB Groningen, Netherlands;
32.Univ Groningen, Univ Med Ctr Groningen, NL-9700 RB Groningen, Netherlands;
33.Univ Hosp Gasthuisberg, Div Gastroenterol, B-3000 Leuven, Belgium;
34.Harvard Med Sch, Massachusetts Gen Hosp, Gastroenterol Unit, Boston, MA 02114 USA;
35.Univ Pittsburgh, Sch Med, Dept Med, Div Gastroenterol Hepatol & Nutr, Pittsburgh, PA 15213 USA;
36.Univ Pittsburgh, Grad Sch Publ Hlth, Dept Human Genet, Pittsburgh, PA 15261 USA;
37.Kings Coll London, Dept Med & Mol Genet, London SE1 9RT, England;
38.Univ Witwatersrand, Sydney Brenner Inst Mol Biosci, ZA-2193 Johannesburg, South Africa;
39.Univ Montreal, Fac Med, Montreal, PQ H3C 3J7, Canada;
40.Yale Univ, Sch Med, Dept Genet, New Haven, CT 06510 USA
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Huang, Hailiang,39;Amato, Mauro. Fine-mapping inflammatory bowel disease loci to single-variant resolution[J]. NATURE,2017,547(7662):173-+.
APA Huang, Hailiang,&39;Amato, Mauro.(2017).Fine-mapping inflammatory bowel disease loci to single-variant resolution.NATURE,547(7662),173-+.
MLA Huang, Hailiang,et al."Fine-mapping inflammatory bowel disease loci to single-variant resolution".NATURE 547.7662(2017):173-+.
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