GSTDTAP  > 地球科学
DOI10.1126/science.aat6720
Transcriptome and epigenome landscape of human cortical development modeled in organoids
Amiri, Anahita1; Coppola, Gianfilippo1; Scuderi, Soraya1; Wu, Feinan1; Roychowdhury, Tanmoy2; Liu, Fuchen3; Pochareddy, Sirisha3; Shin, Yurae3,4; Safi, Alexias5; Song, Lingyun5; Zhu, Ying3,6; Sousa, Andre M. M.3; Gerstein, Mark7,8,9; Crawford, Gregory E.5; Sestan, Nenad3,10; Abyzov, Alexej2; Vaccarino, Flora M.1,3,10
2018-12-14
发表期刊SCIENCE
ISSN0036-8075
EISSN1095-9203
出版年2018
卷号362期号:6420页码:1268-+
文章类型Article
语种英语
国家USA; South Korea
英文摘要

Genes implicated in neuropsychiatric disorders are active in human fetal brain, yet difficult to study in a longitudinal fashion. We demonstrate that organoids from human pluripotent cells model cerebral cortical development on the molecular level before 16 weeks postconception. A multiomics analysis revealed differentially active genes and enhancers, with the greatest changes occurring at the transition from stem cells to progenitors. Networks of converging gene and enhancer modules were assembled into six and four global patterns of expression and activity across time. A pattern with progressive down-regulation was enriched with human-gained enhancers, suggesting their importance in early human brain development. A few convergent gene and enhancer modules were enriched in autism-associated genes and genomic variants in autistic children. The organoid model helps identify functional elements that may drive disease onset.


领域地球科学 ; 气候变化 ; 资源环境
收录类别SCI-E
WOS记录号WOS:000452994400045
WOS关键词PLURIPOTENT STEM-CELLS ; GENE-EXPRESSION ; READ ALIGNMENT ; SENDAI-VIRUS ; HUMAN GENOME ; RISK ; CHROMATIN ; DYNAMICS ; COMMON ; RARE
WOS类目Multidisciplinary Sciences
WOS研究方向Science & Technology - Other Topics
引用统计
文献类型期刊论文
条目标识符http://119.78.100.173/C666/handle/2XK7JSWQ/200321
专题地球科学
资源环境科学
气候变化
作者单位1.Yale Univ, Child Study Ctr, New Haven, CT 06520 USA;
2.Mayo Clin, Dept Hlth Sci Res, Ctr Individualized Med, Rochester, MN 55905 USA;
3.Yale Univ, Dept Neurosci, New Haven, CT 06520 USA;
4.Natl Res Fdn Korea, Daejeon, South Korea;
5.Duke Univ, Dept Pediat, Div Med Genet, Durham, NC 27708 USA;
6.Yale Sch Publ Hlth, Dept Biostat, New Haven, CT USA;
7.Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA;
8.Yale Univ, Dept Comp Sci, POB 2158, New Haven, CT 06520 USA;
9.Yale Univ, Dept Stat & Data Sci, New Haven, CT 06520 USA;
10.Yale Univ, Kavli Inst Neurosci, New Haven, CT 06520 USA
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Amiri, Anahita,Coppola, Gianfilippo,Scuderi, Soraya,et al. Transcriptome and epigenome landscape of human cortical development modeled in organoids[J]. SCIENCE,2018,362(6420):1268-+.
APA Amiri, Anahita.,Coppola, Gianfilippo.,Scuderi, Soraya.,Wu, Feinan.,Roychowdhury, Tanmoy.,...&Vaccarino, Flora M..(2018).Transcriptome and epigenome landscape of human cortical development modeled in organoids.SCIENCE,362(6420),1268-+.
MLA Amiri, Anahita,et al."Transcriptome and epigenome landscape of human cortical development modeled in organoids".SCIENCE 362.6420(2018):1268-+.
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