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DOI | 10.1126/science.aad5901 |
Genomic history of the seventh pandemic of cholera in Africa | |
Weill, Francois-Xavier1,2; Domman, Daryl2; Njamkepo, Elisabeth1; Tarr, Cheryl3; Rauzier, Jean1; Fawal, Nizar1; Keddy, Karen H.4,5; Salje, Henrik6,7; Moore, Sandra8; Mukhopadhyay, Asish K.9; Bercion, Raymond10,11; Luquero, Francisco J.12; Ngandjio, Antoinette13; Dosso, Mireille14; Monakhova, Elena15; Garin, Benoit11; Bouchier, Christiane16; Pazzani, Carlo17; Mutreja, Ankur18,19; Grunow, Roland20; Sidikou, Fati21; Bonte, Laurence22; Breurec, Sebastien10,34; Damian, Maria23; Njanpop-Lafourcade, Berthe-Marie24; Sapriel, Guillaume25,26; Page, Anne-Laure12; Hamze, Monzer27; Henkens, Myriam28; Chowdhury, Goutam9; Mengel, Martin24; Koeck, Jean-Louis29,35; Fournier, Jean-Michel30; Dougan, Gordon2,18; Grimont, Patrick A. D.31; Parkhill, Julian2; Holt, Kathryn E.32; Piarroux, Renaud8; Ramamurthy, Thandavarayan19; Quilici, Marie-Laure1,30; Thomson, Nicholas R.2,33 | |
2017-11-10 | |
发表期刊 | SCIENCE |
ISSN | 0036-8075 |
EISSN | 1095-9203 |
出版年 | 2017 |
卷号 | 358期号:6364页码:785-+ |
文章类型 | Article |
语种 | 英语 |
国家 | France; England; USA; South Africa; India; Cent Afr Republ; Senegal; Cameroon; Cote Ivoire; Russia; Italy; Germany; Niger; Romania; Lebanon; Belgium; Djibouti; Australia; Guadeloupe |
英文摘要 | The seventh cholera pandemic has heavily affected Africa, although the origin and continental spread of the disease remain undefined. We used genomic data from 1070 Vibrio cholerae O1 isolates, across 45 African countries and over a 49-year period, to show that past epidemics were attributable to a single expanded lineage. This lineage was introduced at least 11 times since 1970, into two main regions, West Africa and East/ Southern Africa, causing epidemics that lasted up to 28 years. The last five introductions into Africa, all from Asia, involved multidrug-resistant sublineages that replaced antibiotic-susceptible sublineages after 2000. This phylogenetic framework describes the periodicity of lineage introduction and the stable routes of cholera spread, which should inform the rational design of control measures for cholera in Africa. |
领域 | 地球科学 ; 气候变化 ; 资源环境 |
收录类别 | SCI-E |
WOS记录号 | WOS:000414847100044 |
WOS关键词 | VIBRIO-CHOLERAE ; ENVIRONMENTAL DETERMINANTS ; TRANSMISSION ; DIVERSITY ; EPIDEMIC ; STRAINS ; SPREAD ; CLONE |
WOS类目 | Multidisciplinary Sciences |
WOS研究方向 | Science & Technology - Other Topics |
URL | 查看原文 |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://119.78.100.173/C666/handle/2XK7JSWQ/197301 |
专题 | 地球科学 资源环境科学 气候变化 |
作者单位 | 1.Inst Pasteur, Unite Bacteries Pathogenes Enter, F-75015 Paris, France; 2.Wellcome Trust Genome Campus, Wellcome Trust Sanger Inst, Hinxton CB10 1SA, England; 3.Ctr Dis Control & Prevent, Escherichia & Shigella Reference Unit, Atlanta, GA 30333 USA; 4.Natl Inst Communicable Dis, Ctr Enter Dis, ZA-2131 Johannesburg, South Africa; 5.Univ Witwatersrand, Fac Hlth Sci, ZA-2193 Johannesburg, South Africa; 6.Inst Pasteur, Math Modelling Infect Dis, F-75015 Paris, France; 7.Johns Hopkins Bloomberg Sch Publ Hlth, Baltimore, MD 21205 USA; 8.Univ Mediterranee, CHU Timone, Lab Parasitol Mycol, F-13385 Marseille, France; 9.NICED, Kolkata 700010, W Bengal, India; 10.Inst Pasteur, BP 923, Bangui, Cent Afr Republ; 11.Inst Pasteur, BP 220, Dakar, Senegal; 12.Epictr, F-75011 Paris, France; 13.Ctr Pasteur Cameroun, BP 1274, Yaounde, Cameroon; 14.Inst Pasteur, Bacteriol & Virol Dept, Abidjan, Cote Ivoire; 15.Rostov On Don Res Inst Plague Control, Rostov Na Donu, Russia; 16.Inst Pasteur, Plate Forme Genom PF1, F-75015 Paris, France; 17.Univ Bari A Moro, Dept Biol, I-70126 Bari, Italy; 18.Univ Cambridge, Addenbrookes Hosp, Dept Med, Cambridge CB2 0SP, England; 19.THSTI, Faridabad 121001, Haryana, India; 20.Robert Koch Inst, D-13353 Berlin, Germany; 21.Ctr Rech Med & Sanit CERMES, BP 10887, Niamey, Niger; 22.MSF, F-75011 Paris, France; 23.Cantacuzino Natl Inst Res Dev Microbiol & Immunol, Bucharest, Romania; 24.AMP, F-75015 Paris, France; 25.Univ Versailles St Quentin En Yvelines, UFR Sci Sante Simone Veil, F-78180 Montigny Le Bretonneux, France; 26.ISYEB, UMR 7205, Atelier Bioinformat, F-75005 Paris, France; 27.Univ Libanaise, EDST FSP, LMSE, Tripoli, Lebanon; 28.Med Sans Frontieres, B-1050 Brussels, Belgium; 29.Ctr Hosp Armees Bouffard, Djibouti, Djibouti; 30.Inst Pasteur, Unite Cholera & Vibr, F-75015 Paris, France; 31.Inst Pasteur, Unite Biodivers Bacteries Pathogenes Emergentes, F-75015 Paris, France; 32.Univ Melbourne, Mol Sci & Biotechnol Inst Bio21, Dept Biochem & Mol Biol, Parkville, Vic 3010, Australia; 33.London Sch Hyg & Trop Med, London WC1E 7HT, England; 34.Univ Antilles, Univ Hosp Pointe A Pitre Abymes, Pointe a Pitre, Guadeloupe, Guadeloupe; 35.Hop Instruct Armees Robert Picque, Villenave Dornon, France |
推荐引用方式 GB/T 7714 | Weill, Francois-Xavier,Domman, Daryl,Njamkepo, Elisabeth,et al. Genomic history of the seventh pandemic of cholera in Africa[J]. SCIENCE,2017,358(6364):785-+. |
APA | Weill, Francois-Xavier.,Domman, Daryl.,Njamkepo, Elisabeth.,Tarr, Cheryl.,Rauzier, Jean.,...&Thomson, Nicholas R..(2017).Genomic history of the seventh pandemic of cholera in Africa.SCIENCE,358(6364),785-+. |
MLA | Weill, Francois-Xavier,et al."Genomic history of the seventh pandemic of cholera in Africa".SCIENCE 358.6364(2017):785-+. |
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